Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   N596_RS09170 Genome accession   NC_022584
Coordinates   1923782..1924513 (+) Length   243 a.a.
NCBI ID   WP_023027712.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1918782..1929513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS09140 (N596_09405) - 1919084..1920505 (+) 1422 WP_023022264.1 NCS2 family permease -
  N596_RS09145 (N596_09410) tsaE 1920783..1921232 (+) 450 WP_042361452.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  N596_RS09150 (N596_09415) - 1921235..1921768 (+) 534 WP_023022268.1 GNAT family N-acetyltransferase -
  N596_RS09155 (N596_09420) - 1921765..1922934 (+) 1170 WP_023022270.1 LCP family protein -
  N596_RS09160 (N596_09425) - 1922994..1923287 (-) 294 WP_023022273.1 hypothetical protein -
  N596_RS09165 (N596_09430) - 1923301..1923714 (-) 414 WP_023027711.1 HIT family protein -
  N596_RS09170 (N596_09435) pptA 1923782..1924513 (+) 732 WP_023027712.1 ABC transporter ATP-binding protein Regulator
  N596_RS09175 (N596_09440) - 1924510..1925565 (+) 1056 WP_023027713.1 ABC transporter permease -
  N596_RS09180 (N596_09445) ccrZ 1925606..1926400 (+) 795 WP_023022280.1 cell cycle regulator CcrZ -
  N596_RS09185 (N596_09450) trmB 1926397..1927032 (+) 636 WP_023027714.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  N596_RS09190 (N596_09455) rimP 1927354..1927842 (+) 489 WP_081698240.1 ribosome maturation factor RimP -
  N596_RS09195 (N596_09460) nusA 1927888..1929033 (+) 1146 WP_023022285.1 transcription termination factor NusA -
  N596_RS09200 (N596_09465) rnpM 1929044..1929340 (+) 297 WP_006596879.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27042.37 Da        Isoelectric Point: 4.5824

>NTDB_id=62989 N596_RS09170 WP_023027712.1 1923782..1924513(+) (pptA) [Streptococcus ilei]
MLEIKNLTGGYVNIPVLKDVSFEVGDGQLIGLIGLNGAGKSTTINEIIGLLRPYAGEIRIDDLTLVASPSAYRQKIGYIP
ETPSLYEELTLREHIETVAMAYDLDQEAVFARVTPLLKQFRLEEKLDWFPVHFSKGMKQKVMIICAFAVDPSLFIVDEPF
LGLDPVAISDLIQLLNAEKEKGKSILMSTHVLDSAEKMCDAFVILHKGQVRAQGTLEELRKEFGMADADLNEIYLALTKE
ADR

Nucleotide


Download         Length: 732 bp        

>NTDB_id=62989 N596_RS09170 WP_023027712.1 1923782..1924513(+) (pptA) [Streptococcus ilei]
ATGTTAGAAATAAAAAACCTGACAGGAGGCTATGTCAATATCCCTGTCTTAAAAGATGTTAGTTTTGAGGTTGGCGATGG
CCAATTAATTGGATTGATCGGCTTGAATGGGGCAGGGAAATCAACGACCATTAATGAAATTATTGGTCTCCTGCGTCCCT
ATGCTGGTGAAATCCGGATTGATGACTTGACTCTAGTTGCTTCTCCAAGTGCTTATCGTCAAAAAATTGGTTATATCCCA
GAAACCCCTAGCCTTTATGAAGAGTTAACCTTGCGTGAGCATATTGAAACAGTAGCTATGGCCTATGATTTGGATCAAGA
AGCTGTTTTTGCGCGTGTAACTCCTCTCTTGAAACAATTTCGACTAGAGGAAAAATTGGATTGGTTTCCTGTCCATTTTT
CTAAGGGGATGAAACAAAAGGTCATGATCATTTGTGCCTTTGCTGTGGATCCAAGTTTGTTTATTGTGGATGAGCCCTTT
TTAGGCTTAGATCCAGTTGCAATCTCAGATTTAATTCAACTATTGAATGCAGAGAAAGAAAAAGGAAAATCTATTTTAAT
GAGTACCCATGTTCTGGATTCTGCTGAAAAAATGTGTGATGCCTTTGTCATCCTCCATAAGGGACAGGTCCGTGCCCAGG
GGACTTTAGAGGAATTGCGAAAAGAGTTTGGAATGGCAGATGCGGATTTGAATGAGATTTACCTTGCACTAACAAAAGAG
GCTGACCGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.732

98.354

0.745
  pptA Streptococcus thermophilus LMD-9

74.895

98.354

0.737

Multiple sequence alignment