Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LPB25_RS12675 Genome accession   NZ_CP087533
Coordinates   2563538..2564143 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica strain Z01320SL0026     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2558538..2569143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB25_RS12660 (LPB25_12620) helD 2558755..2560809 (-) 2055 WP_023241546.1 DNA helicase IV -
  LPB25_RS12665 (LPB25_12625) - 2560933..2561379 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LPB25_RS12670 (LPB25_12630) yccS 2561398..2563551 (+) 2154 WP_023241545.1 YccS family putative transporter -
  LPB25_RS12675 (LPB25_12635) sxy/tfoX 2563538..2564143 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LPB25_RS12680 (LPB25_12640) sulA 2564360..2564869 (+) 510 WP_023195822.1 SOS-induced cell division inhibitor SulA -
  LPB25_RS12685 (LPB25_12645) ompA 2565226..2566278 (+) 1053 WP_001670727.1 porin OmpA -
  LPB25_RS12690 (LPB25_12650) matP 2566350..2566802 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LPB25_RS12695 (LPB25_12655) - 2566988..2568748 (+) 1761 WP_023241544.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=629804 LPB25_RS12675 WP_001202375.1 2563538..2564143(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01320SL0026]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=629804 LPB25_RS12675 WP_001202375.1 2563538..2564143(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01320SL0026]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTCCCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCACTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751