Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NQS38_RS09340 Genome accession   NZ_CP104496
Coordinates   1954577..1955620 (-) Length   347 a.a.
NCBI ID   WP_016723284.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain Gj707     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1949577..1960620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQS38_RS09330 (NQS38_09330) - 1951476..1953566 (+) 2091 WP_016725720.1 site-specific recombinase -
  NQS38_RS09335 (NQS38_09335) rbsK 1953593..1954540 (-) 948 WP_020831547.1 ribokinase -
  NQS38_RS09340 (NQS38_09340) cytR 1954577..1955620 (-) 1044 WP_016723284.1 LacI family DNA-binding transcriptional regulator Regulator
  NQS38_RS09345 (NQS38_09345) - 1955640..1956686 (-) 1047 WP_020831548.1 ABC transporter permease -
  NQS38_RS09350 (NQS38_09350) - 1956676..1958247 (-) 1572 WP_020831549.1 sugar ABC transporter ATP-binding protein -
  NQS38_RS09355 (NQS38_09355) - 1958283..1959242 (-) 960 WP_016723281.1 sugar ABC transporter substrate-binding protein -
  NQS38_RS09360 (NQS38_09360) iscR 1959650..1960231 (+) 582 WP_011000970.1 Fe-S cluster assembly transcriptional regulator IscR -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37244.36 Da        Isoelectric Point: 7.1066

>NTDB_id=629796 NQS38_RS09340 WP_016723284.1 1954577..1955620(-) (cytR) [Ralstonia pseudosolanacearum strain Gj707]
MATIKDVAALAGVSFTTVSHVINNTRPVNSETRKRVEEAIRATRYVPSAVARSLKHRTTRTIGVLVPTATNPYFAELARG
IEDVCAAAGYSVILCNSDDAPRKQRDYLRVLMEKRVDGLIVSSAGPDNALLDALGESALPVVMVDRPTEGILADQVQIDH
EEGAYLATRHLLELGHRRIACISGPSTLSVTAGRLAGFHRALREAGVPEHAARVAEGDFTSPGGYRAARELLTTGETPTA
IFASNDLMGIGALRAAAELGIAVPKELSIIGFDDIELSRYVYPALSTVGQSIRQLGETTASTLLEHLTDHAARHHHEIPD
APRRIVLPPRLSLRESTAEPARPARAA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=629796 NQS38_RS09340 WP_016723284.1 1954577..1955620(-) (cytR) [Ralstonia pseudosolanacearum strain Gj707]
ATGGCCACCATCAAGGACGTTGCCGCATTAGCCGGGGTGTCATTCACCACCGTCTCGCATGTCATCAACAACACACGGCC
GGTCAACTCGGAAACGCGCAAGCGCGTGGAAGAGGCCATCCGCGCCACGCGCTATGTACCCAGCGCCGTAGCGCGCTCGC
TCAAGCACCGCACCACGCGCACCATCGGCGTGCTGGTGCCGACCGCCACCAACCCCTACTTCGCCGAACTGGCGCGCGGC
ATCGAAGACGTGTGCGCCGCGGCCGGCTACAGCGTCATCCTGTGCAACTCCGATGACGCCCCCCGCAAGCAGCGCGACTA
CCTGCGCGTGCTGATGGAGAAGCGCGTCGACGGCCTCATCGTCAGCAGCGCCGGACCGGACAACGCGCTGCTCGATGCAC
TGGGCGAATCCGCGCTGCCCGTGGTGATGGTGGACCGCCCCACCGAGGGCATCCTGGCCGACCAGGTGCAGATCGACCAT
GAGGAAGGCGCCTACCTGGCGACCCGGCATCTGCTCGAGCTCGGGCACCGCCGCATTGCCTGCATCAGCGGACCGTCGAC
GCTGAGCGTGACCGCCGGGCGGCTGGCGGGCTTTCACCGGGCGCTGCGCGAAGCCGGCGTGCCCGAGCACGCCGCGCGCG
TGGCCGAAGGCGACTTCACCAGCCCCGGCGGCTACCGCGCCGCGCGCGAACTGCTGACCACCGGCGAGACGCCCACCGCC
ATCTTCGCCAGCAACGACCTGATGGGCATCGGCGCGCTGCGTGCGGCCGCCGAGCTGGGCATCGCGGTGCCGAAGGAACT
GTCCATCATCGGCTTCGACGACATCGAGCTGAGCCGCTATGTCTATCCGGCGCTGTCCACGGTGGGCCAGTCGATCCGGC
AACTGGGCGAGACCACGGCCTCAACCCTGCTCGAGCACCTGACCGATCACGCCGCGCGGCATCACCACGAGATCCCCGAC
GCGCCGCGCCGCATCGTGCTGCCGCCGCGCCTGTCGCTGCGCGAGTCGACCGCCGAGCCCGCACGCCCCGCGCGCGCGGC
CTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-337)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.012

98.559

0.375
  cytR Vibrio parahaemolyticus RIMD 2210633

36.55

98.559

0.36