Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LPB32_RS08295 Genome accession   NZ_CP087517
Coordinates   1682023..1682628 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica strain Z01319SL0020     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1677023..1687628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB32_RS08280 (LPB32_08240) helD 1677240..1679294 (-) 2055 WP_000420499.1 DNA helicase IV -
  LPB32_RS08285 (LPB32_08245) - 1679418..1679864 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LPB32_RS08290 (LPB32_08250) yccS 1679883..1682036 (+) 2154 WP_000950862.1 YccS family putative transporter -
  LPB32_RS08295 (LPB32_08255) sxy/tfoX 1682023..1682628 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LPB32_RS08300 (LPB32_08260) sulA 1682845..1683354 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LPB32_RS08305 (LPB32_08265) ompA 1683711..1684769 (+) 1059 WP_001747676.1 porin OmpA -
  LPB32_RS08310 (LPB32_08270) matP 1684841..1685293 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LPB32_RS08315 (LPB32_08275) - 1685479..1687239 (+) 1761 WP_000156447.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=629643 LPB32_RS08295 WP_001202375.1 1682023..1682628(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01319SL0020]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=629643 LPB32_RS08295 WP_001202375.1 1682023..1682628(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01319SL0020]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751