Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LPB10_RS16975 Genome accession   NZ_CP087516
Coordinates   3481796..3482401 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica strain Z01320SL0029     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3476796..3487401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB10_RS16960 (LPB10_16940) helD 3477013..3479067 (-) 2055 WP_000420519.1 DNA helicase IV -
  LPB10_RS16965 (LPB10_16945) - 3479191..3479637 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LPB10_RS16970 (LPB10_16950) yccS 3479656..3481809 (+) 2154 WP_000950861.1 YccS family putative transporter -
  LPB10_RS16975 (LPB10_16955) sxy/tfoX 3481796..3482401 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LPB10_RS16980 (LPB10_16960) sulA 3482618..3483127 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LPB10_RS16985 (LPB10_16965) ompA 3483484..3484536 (+) 1053 WP_001670727.1 porin OmpA -
  LPB10_RS16990 (LPB10_16970) matP 3484608..3485060 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LPB10_RS16995 (LPB10_16975) - 3485246..3487006 (+) 1761 WP_000156457.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=629635 LPB10_RS16975 WP_001202375.1 3481796..3482401(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01320SL0029]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=629635 LPB10_RS16975 WP_001202375.1 3481796..3482401(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01320SL0029]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751