Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N4S17_RS19615 Genome accession   NZ_CP104472
Coordinates   4081392..4081997 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain UC4224     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4076392..4086997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4S17_RS19585 (N4S17_19585) rsmS 4077097..4077258 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  N4S17_RS19590 (N4S17_19590) priC 4077272..4077799 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  N4S17_RS19595 (N4S17_19595) ybaN 4077869..4078246 (+) 378 WP_001188905.1 DUF454 family protein -
  N4S17_RS19600 (N4S17_19600) apt 4078399..4078950 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  N4S17_RS19605 (N4S17_19605) dnaX 4079079..4081010 (+) 1932 WP_062865707.1 DNA polymerase III subunit gamma/tau -
  N4S17_RS19610 (N4S17_19610) ybaB 4081063..4081392 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N4S17_RS19615 (N4S17_19615) recR 4081392..4081997 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N4S17_RS19620 (N4S17_19620) htpG 4082107..4083981 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  N4S17_RS19625 (N4S17_19625) adk 4084162..4084806 (+) 645 WP_001220233.1 adenylate kinase -
  N4S17_RS19630 (N4S17_19630) hemH 4085042..4086004 (+) 963 WP_001250088.1 ferrochelatase -
  N4S17_RS19635 (N4S17_19635) aes 4086001..4086960 (-) 960 WP_000801846.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=629522 N4S17_RS19615 WP_001195025.1 4081392..4081997(+) (recR) [Escherichia coli strain UC4224]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=629522 N4S17_RS19615 WP_001195025.1 4081392..4081997(+) (recR) [Escherichia coli strain UC4224]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443