Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LPB00_RS15130 Genome accession   NZ_CP087488
Coordinates   3042295..3042900 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica strain Z01320SL0038     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3037295..3047900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB00_RS15115 (LPB00_15060) helD 3037512..3039566 (-) 2055 WP_000420505.1 DNA helicase IV -
  LPB00_RS15120 (LPB00_15065) - 3039690..3040136 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LPB00_RS15125 (LPB00_15070) yccS 3040155..3042308 (+) 2154 WP_000950876.1 YccS family putative transporter -
  LPB00_RS15130 (LPB00_15075) sxy/tfoX 3042295..3042900 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LPB00_RS15135 (LPB00_15080) sulA 3043117..3043626 (+) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  LPB00_RS15140 (LPB00_15085) ompA 3043983..3045035 (+) 1053 WP_001674965.1 porin OmpA -
  LPB00_RS15145 (LPB00_15090) matP 3045107..3045559 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LPB00_RS15150 (LPB00_15095) - 3045745..3047505 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=629481 LPB00_RS15130 WP_001202375.1 3042295..3042900(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01320SL0038]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=629481 LPB00_RS15130 WP_001202375.1 3042295..3042900(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01320SL0038]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751