Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   N4P55_RS23255 Genome accession   NZ_CP104408
Coordinates   5093525..5094229 (+) Length   234 a.a.
NCBI ID   WP_262666224.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain Ant01     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5088525..5099229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P55_RS23240 (N4P55_23255) - 5088767..5089987 (-) 1221 WP_064454023.1 maltoporin -
  N4P55_RS23245 (N4P55_23260) treC 5090060..5091706 (-) 1647 WP_262666223.1 alpha,alpha-phosphotrehalase -
  N4P55_RS23250 (N4P55_23265) treP 5091831..5093273 (-) 1443 WP_064454025.1 PTS system trehalose-specific EIIBC component -
  N4P55_RS23255 (N4P55_23270) treR 5093525..5094229 (+) 705 WP_262666224.1 trehalose operon repressor Regulator
  N4P55_RS23260 (N4P55_23275) - 5094949..5097087 (-) 2139 WP_262666225.1 S-type pyocin domain-containing protein -
  N4P55_RS23265 (N4P55_23280) - 5097845..5097976 (-) 132 WP_257784309.1 hypothetical protein -
  N4P55_RS23270 (N4P55_23285) - 5097972..5098115 (-) 144 Protein_4600 Arm DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26682.06 Da        Isoelectric Point: 6.0889

>NTDB_id=629348 N4P55_RS23255 WP_262666224.1 5093525..5094229(+) (treR) [Pseudomonas fluorescens strain Ant01]
MSKYNQIYTDLLANITTERLQRGTRLPSETELMDAYQASRGTVRRAIEQLQERGFAQKIHGKGTFVLSPNPIEFQLGGIV
SFHETHADLGDDVRTDVVEFSQLPLEGSLLQHIEAEPGTLITRIKRVRRIGGKRVILDINHFVADLIPGLDRSIAEQSIY
AFIEDTLQLQISYAQRTIEALPRSKDDQAHLDLDGQSHVIVVSNQTFLQDGRQFEYTESRHTLDKFYFSDIARR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=629348 N4P55_RS23255 WP_262666224.1 5093525..5094229(+) (treR) [Pseudomonas fluorescens strain Ant01]
ATGAGCAAATACAACCAGATCTATACCGATCTGCTTGCCAACATCACCACTGAACGCCTGCAACGCGGCACGCGCCTTCC
CTCCGAAACCGAACTGATGGACGCCTACCAAGCCAGCCGTGGCACCGTGCGCCGCGCTATCGAGCAGCTGCAGGAACGCG
GGTTTGCGCAAAAAATCCACGGCAAGGGCACCTTCGTGCTGTCGCCCAACCCGATCGAGTTCCAACTGGGTGGCATCGTC
AGCTTCCACGAAACCCACGCCGACCTGGGCGATGACGTACGCACCGACGTCGTCGAATTCAGCCAGTTGCCGCTGGAAGG
CTCTCTGCTGCAACACATCGAAGCCGAGCCCGGCACGTTGATCACGCGGATCAAACGGGTACGGCGCATCGGCGGCAAAC
GGGTGATTCTCGACATCAACCACTTCGTCGCCGACCTGATCCCAGGCCTGGACCGCTCGATTGCCGAGCAGTCGATCTAT
GCGTTTATCGAAGACACCTTGCAGCTGCAGATCAGCTACGCGCAGCGCACCATCGAAGCCCTGCCCCGCAGCAAAGACGA
CCAGGCGCATCTGGACCTGGATGGGCAAAGCCATGTGATCGTGGTGAGTAACCAGACGTTTTTGCAGGATGGAAGGCAGT
TCGAGTACACCGAGTCACGGCATACGTTGGATAAGTTTTATTTTTCGGACATTGCCCGGCGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

38.034

100

0.38