Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   N4P55_RS11700 Genome accession   NZ_CP104408
Coordinates   2506292..2506909 (+) Length   205 a.a.
NCBI ID   WP_064451939.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain Ant01     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2501292..2511909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P55_RS11680 (N4P55_11695) - 2501975..2502901 (-) 927 WP_064451936.1 alpha/beta hydrolase -
  N4P55_RS11685 (N4P55_11700) - 2503024..2504175 (-) 1152 Protein_2301 diguanylate cyclase -
  N4P55_RS11690 (N4P55_11705) - 2504292..2504879 (+) 588 WP_064451938.1 NUDIX domain-containing protein -
  N4P55_RS11695 (N4P55_11710) - 2504886..2506067 (+) 1182 WP_262667992.1 lipase family protein -
  N4P55_RS11700 (N4P55_11715) dinR/lexA 2506292..2506909 (+) 618 WP_064451939.1 transcriptional repressor LexA Regulator
  N4P55_RS11705 (N4P55_11720) imuA 2506909..2507523 (+) 615 WP_262667592.1 translesion DNA synthesis-associated protein ImuA -
  N4P55_RS11710 (N4P55_11725) - 2507531..2508946 (+) 1416 WP_064451941.1 Y-family DNA polymerase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22360.63 Da        Isoelectric Point: 6.8758

>NTDB_id=629319 N4P55_RS11700 WP_064451939.1 2506292..2506909(+) (dinR/lexA) [Pseudomonas fluorescens strain Ant01]
MYSMTTLTPRRTAILTFIRDRIAQQGQPPSLAEIAEAFGFASRSVARKHVVALTEAGFIEVNPNQARGIRLLNQPARPEW
LDVPVLGRVAAGLPIGADAEVHSRLQLDPGTFAKTPDYLLRVQGDSMIEDGILDGDLVGVRRSAEALNGQIVVARLDGEV
TIKRFERHGDHVRLLPRNPAYQPIVVGPDQDLAIEGVFCGLVRQG

Nucleotide


Download         Length: 618 bp        

>NTDB_id=629319 N4P55_RS11700 WP_064451939.1 2506292..2506909(+) (dinR/lexA) [Pseudomonas fluorescens strain Ant01]
ATGTACTCCATGACGACTTTAACCCCCCGCCGTACTGCCATCCTGACCTTTATCCGCGACCGTATCGCGCAACAAGGCCA
ACCCCCCAGCCTCGCCGAGATCGCCGAGGCGTTTGGCTTTGCCTCGCGCAGTGTCGCTCGCAAGCATGTGGTGGCCCTGA
CCGAAGCCGGCTTCATTGAGGTCAACCCCAATCAGGCGCGCGGTATCCGCCTGCTCAACCAACCGGCACGCCCCGAATGG
CTGGACGTCCCCGTCCTCGGCCGCGTCGCGGCAGGCTTGCCCATCGGCGCCGACGCCGAAGTGCACAGCCGCCTGCAACT
CGACCCTGGCACCTTCGCGAAAACCCCTGACTACCTGCTGCGTGTGCAGGGCGACTCAATGATCGAAGACGGCATCCTCG
ATGGCGATCTGGTGGGCGTACGCCGCAGCGCCGAGGCCTTGAATGGGCAGATTGTAGTGGCGCGCCTGGACGGCGAAGTC
ACCATCAAACGCTTCGAACGTCACGGCGACCATGTACGCCTGCTGCCACGCAACCCCGCGTATCAACCCATCGTGGTAGG
CCCTGATCAGGACCTGGCTATCGAAGGGGTGTTCTGCGGCCTGGTGAGGCAAGGCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(84-198)

LexA DNA binding domain (LexA_DNA_bind)

(4-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

39.13

100

0.395