Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   LOZ87_RS17725 Genome accession   NZ_CP087391
Coordinates   3599300..3600445 (+) Length   381 a.a.
NCBI ID   WP_033574379.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3594300..3605445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS17705 (LOZ87_17705) - 3595197..3595625 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  LOZ87_RS17710 (LOZ87_17710) - 3595779..3596291 (+) 513 Protein_3442 bacteriocin biosynthesis protein AlbG -
  LOZ87_RS17715 (LOZ87_17715) - 3596298..3597674 (-) 1377 WP_039063793.1 YncE family protein -
  LOZ87_RS17720 (LOZ87_17720) - 3597714..3599069 (-) 1356 WP_039063794.1 YncE family protein -
  LOZ87_RS17725 (LOZ87_17725) rapF 3599300..3600445 (+) 1146 WP_033574379.1 tetratricopeptide repeat protein Regulator
  LOZ87_RS17730 (LOZ87_17730) phrF 3600429..3600548 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LOZ87_RS17735 (LOZ87_17735) - 3600745..3600948 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  LOZ87_RS17740 (LOZ87_17740) - 3600962..3601165 (+) 204 WP_007407641.1 hypothetical protein -
  LOZ87_RS17745 (LOZ87_17745) - 3601200..3601385 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  LOZ87_RS17750 (LOZ87_17750) - 3601571..3601852 (+) 282 WP_007407643.1 hypothetical protein -
  LOZ87_RS17755 (LOZ87_17755) - 3601896..3602408 (+) 513 WP_007407644.1 stage II sporulation protein M -
  LOZ87_RS17760 (LOZ87_17760) - 3602999..3603217 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  LOZ87_RS17765 (LOZ87_17765) speB 3603385..3604257 (-) 873 WP_007614448.1 agmatinase -
  LOZ87_RS17770 (LOZ87_17770) speE 3604316..3605146 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45571.63 Da        Isoelectric Point: 4.5769

>NTDB_id=629305 LOZ87_RS17725 WP_033574379.1 3599300..3600445(+) (rapF) [Bacillus amyloliquefaciens strain ZF57]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=629305 LOZ87_RS17725 WP_033574379.1 3599300..3600445(+) (rapF) [Bacillus amyloliquefaciens strain ZF57]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCAGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATTATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AAGCAGAAGATTCCCTATATATCGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567