Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LOZ87_RS12855 Genome accession   NZ_CP087391
Coordinates   2637527..2638279 (-) Length   250 a.a.
NCBI ID   WP_020956151.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2632527..2643279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS12830 (LOZ87_12830) mreC 2632963..2633826 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  LOZ87_RS12835 (LOZ87_12835) mreB 2633857..2634870 (-) 1014 WP_039063360.1 cell shape-determining protein MreB -
  LOZ87_RS12840 (LOZ87_12840) radC 2634962..2635657 (-) 696 WP_007408165.1 RadC family protein -
  LOZ87_RS12845 (LOZ87_12845) - 2635689..2636258 (-) 570 WP_007408164.1 Maf family protein -
  LOZ87_RS12850 (LOZ87_12850) - 2636399..2637400 (-) 1002 WP_032866593.1 SPOR domain-containing protein -
  LOZ87_RS12855 (LOZ87_12855) comC 2637527..2638279 (-) 753 WP_020956151.1 prepilin peptidase Machinery gene
  LOZ87_RS12860 (LOZ87_12860) - 2638419..2639711 (-) 1293 WP_007408161.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  LOZ87_RS12865 (LOZ87_12865) - 2639770..2642412 (-) 2643 WP_039063361.1 valine--tRNA ligase -
  LOZ87_RS12870 (LOZ87_12870) - 2642865..2643056 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27129.84 Da        Isoelectric Point: 9.5938

>NTDB_id=629287 LOZ87_RS12855 WP_020956151.1 2637527..2638279(-) (comC) [Bacillus amyloliquefaciens strain ZF57]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLGSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=629287 LOZ87_RS12855 WP_020956151.1 2637527..2638279(-) (comC) [Bacillus amyloliquefaciens strain ZF57]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGTTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGCTTATTTACGGCTGCAGGTATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGTTGGGTTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584