Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LOZ87_RS10465 Genome accession   NZ_CP087391
Coordinates   2153630..2154238 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2148630..2159238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS10425 (LOZ87_10425) - 2149641..2150147 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  LOZ87_RS10430 (LOZ87_10430) - 2150286..2150699 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  LOZ87_RS10435 (LOZ87_10435) - 2150729..2151205 (-) 477 WP_039063256.1 YppG family protein -
  LOZ87_RS10440 (LOZ87_10440) - 2151392..2151574 (+) 183 WP_003153532.1 YppF family protein -
  LOZ87_RS10445 (LOZ87_10445) - 2151613..2151981 (-) 369 WP_003153529.1 YppE family protein -
  LOZ87_RS10450 (LOZ87_10450) - 2152027..2152272 (-) 246 WP_039063257.1 DUF5446 family protein -
  LOZ87_RS10455 (LOZ87_10455) sspM 2152478..2152582 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  LOZ87_RS10460 (LOZ87_10460) - 2152626..2153588 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  LOZ87_RS10465 (LOZ87_10465) recU 2153630..2154238 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  LOZ87_RS10470 (LOZ87_10470) - 2154277..2157060 (+) 2784 WP_039063258.1 transglycosylase domain-containing protein -
  LOZ87_RS10475 (LOZ87_10475) - 2157138..2157629 (-) 492 WP_007409487.1 YpoC family protein -
  LOZ87_RS10480 (LOZ87_10480) nth 2157626..2158285 (-) 660 WP_007409486.1 endonuclease III -
  LOZ87_RS10485 (LOZ87_10485) dnaD 2158304..2159002 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=629271 LOZ87_RS10465 WP_012117837.1 2153630..2154238(+) (recU) [Bacillus amyloliquefaciens strain ZF57]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=629271 LOZ87_RS10465 WP_012117837.1 2153630..2154238(+) (recU) [Bacillus amyloliquefaciens strain ZF57]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891