Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LOZ87_RS05810 Genome accession   NZ_CP087391
Coordinates   1113869..1114060 (+) Length   63 a.a.
NCBI ID   WP_007409124.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1108869..1119060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS05780 (LOZ87_05780) argF 1109721..1110692 (+) 972 WP_007409130.1 ornithine carbamoyltransferase -
  LOZ87_RS05785 (LOZ87_05785) - 1110768..1110947 (+) 180 WP_003155070.1 YjzC family protein -
  LOZ87_RS05790 (LOZ87_05790) - 1110984..1111169 (-) 186 WP_007409129.1 YjzD family protein -
  LOZ87_RS05795 (LOZ87_05795) - 1111430..1112164 (+) 735 WP_039062884.1 hypothetical protein -
  LOZ87_RS05800 (LOZ87_05800) - 1112247..1112813 (+) 567 WP_039062886.1 hypothetical protein -
  LOZ87_RS05805 (LOZ87_05805) med 1112903..1113856 (+) 954 WP_007409125.1 BMP family ABC transporter substrate-binding protein Regulator
  LOZ87_RS05810 (LOZ87_05810) comZ 1113869..1114060 (+) 192 WP_007409124.1 ComZ family protein Regulator
  LOZ87_RS05815 (LOZ87_05815) - 1114089..1114307 (-) 219 WP_007409123.1 hypothetical protein -
  LOZ87_RS05820 (LOZ87_05820) - 1114474..1115412 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  LOZ87_RS05825 (LOZ87_05825) fabF 1115435..1116673 (+) 1239 WP_020955629.1 beta-ketoacyl-ACP synthase II -
  LOZ87_RS05830 (LOZ87_05830) - 1116756..1117541 (+) 786 WP_020955630.1 DUF2268 domain-containing protein -
  LOZ87_RS05835 (LOZ87_05835) - 1117715..1118701 (+) 987 WP_039062887.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7185.30 Da        Isoelectric Point: 4.2259

>NTDB_id=629256 LOZ87_RS05810 WP_007409124.1 1113869..1114060(+) (comZ) [Bacillus amyloliquefaciens strain ZF57]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSLEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=629256 LOZ87_RS05810 WP_007409124.1 1113869..1114060(+) (comZ) [Bacillus amyloliquefaciens strain ZF57]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTTTGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

84.483

92.063

0.778