Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LOZ87_RS05445 Genome accession   NZ_CP087391
Coordinates   1044608..1045186 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039608..1050186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS19550 - 1040110..1040625 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  LOZ87_RS19555 - 1040917..1041291 (-) 375 Protein_1007 protoglobin domain-containing protein -
  LOZ87_RS05430 (LOZ87_05430) - 1041524..1043047 (-) 1524 WP_039062807.1 FAD-dependent oxidoreductase -
  LOZ87_RS05435 (LOZ87_05435) - 1043172..1044029 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  LOZ87_RS05440 (LOZ87_05440) - 1044059..1044292 (-) 234 WP_007409189.1 IDEAL domain-containing protein -
  LOZ87_RS05445 (LOZ87_05445) comK 1044608..1045186 (+) 579 WP_003155179.1 competence protein ComK Regulator
  LOZ87_RS05450 (LOZ87_05450) - 1045332..1045700 (+) 369 WP_012117235.1 iron chaperone -
  LOZ87_RS05455 (LOZ87_05455) - 1045727..1046098 (+) 372 WP_007409186.1 iron chaperone -
  LOZ87_RS05460 (LOZ87_05460) - 1046224..1047374 (+) 1151 WP_094246999.1 IS3 family transposase -
  LOZ87_RS05465 (LOZ87_05465) eis 1047436..1048647 (-) 1212 WP_007409185.1 enhanced intracellular survival protein Eis -
  LOZ87_RS05470 (LOZ87_05470) - 1048804..1049514 (-) 711 WP_007409183.1 YrpD family protein -
  LOZ87_RS05475 (LOZ87_05475) - 1049710..1049979 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=629252 LOZ87_RS05445 WP_003155179.1 1044608..1045186(+) (comK) [Bacillus amyloliquefaciens strain ZF57]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=629252 LOZ87_RS05445 WP_003155179.1 1044608..1045186(+) (comK) [Bacillus amyloliquefaciens strain ZF57]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCTGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823