Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LOZ87_RS04390 Genome accession   NZ_CP087391
Coordinates   851758..852549 (+) Length   263 a.a.
NCBI ID   WP_012117114.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 846758..857549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS04365 (LOZ87_04365) - 848753..849637 (+) 885 WP_039062789.1 PhzF family phenazine biosynthesis isomerase -
  LOZ87_RS04370 (LOZ87_04370) - 849714..850298 (+) 585 WP_007408549.1 nitroreductase -
  LOZ87_RS04375 (LOZ87_04375) - 850337..850528 (-) 192 WP_003155508.1 YfhD family protein -
  LOZ87_RS04380 (LOZ87_04380) - 850599..850709 (-) 111 WP_003155504.1 YfhE family protein -
  LOZ87_RS04385 (LOZ87_04385) - 850767..851666 (-) 900 WP_039062790.1 TIGR01777 family oxidoreductase -
  LOZ87_RS04390 (LOZ87_04390) recX 851758..852549 (+) 792 WP_012117114.1 recombination regulator RecX Regulator
  LOZ87_RS04395 (LOZ87_04395) - 852556..852870 (+) 315 WP_007408553.1 YfhH family protein -
  LOZ87_RS04400 (LOZ87_04400) - 853015..854208 (+) 1194 WP_025284446.1 MFS transporter -
  LOZ87_RS04405 (LOZ87_04405) - 854248..854637 (-) 390 WP_039062791.1 DUF2606 family protein -
  LOZ87_RS04410 (LOZ87_04410) - 854600..855511 (-) 912 WP_032867735.1 trypsin-like serine peptidase -
  LOZ87_RS04415 (LOZ87_04415) - 855656..855808 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  LOZ87_RS04420 (LOZ87_04420) - 855932..856201 (+) 270 WP_003155492.1 YfhJ family protein -
  LOZ87_RS04425 (LOZ87_04425) - 856329..856856 (+) 528 WP_007408557.1 SH3 domain-containing protein -
  LOZ87_RS04430 (LOZ87_04430) - 856942..857277 (+) 336 WP_020955528.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31004.21 Da        Isoelectric Point: 6.0921

>NTDB_id=629247 LOZ87_RS04390 WP_012117114.1 851758..852549(+) (recX) [Bacillus amyloliquefaciens strain ZF57]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=629247 LOZ87_RS04390 WP_012117114.1 851758..852549(+) (recX) [Bacillus amyloliquefaciens strain ZF57]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTTGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795