Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LOZ87_RS01775 Genome accession   NZ_CP087391
Coordinates   331056..331493 (-) Length   145 a.a.
NCBI ID   WP_032867344.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 326056..336493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS01750 (LOZ87_01750) - 327076..328212 (+) 1137 WP_007409359.1 zinc-dependent alcohol dehydrogenase -
  LOZ87_RS01755 (LOZ87_01755) - 328227..328661 (+) 435 WP_007409358.1 RDD family protein -
  LOZ87_RS01760 (LOZ87_01760) - 328778..329056 (+) 279 WP_263612330.1 YckD family protein -
  LOZ87_RS01765 (LOZ87_01765) - 329160..330596 (+) 1437 WP_007409356.1 glycoside hydrolase family 1 protein -
  LOZ87_RS01770 (LOZ87_01770) nin/comJ 330637..331035 (-) 399 WP_015239128.1 competence protein ComJ Regulator
  LOZ87_RS01775 (LOZ87_01775) nucA/comI 331056..331493 (-) 438 WP_032867344.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LOZ87_RS01780 (LOZ87_01780) hxlB 331851..332408 (-) 558 WP_015239129.1 6-phospho-3-hexuloisomerase -
  LOZ87_RS01785 (LOZ87_01785) hxlA 332405..333040 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  LOZ87_RS01790 (LOZ87_01790) - 333272..333634 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16094.41 Da        Isoelectric Point: 9.0073

>NTDB_id=629242 LOZ87_RS01775 WP_032867344.1 331056..331493(-) (nucA/comI) [Bacillus amyloliquefaciens strain ZF57]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSHYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=629242 LOZ87_RS01775 WP_032867344.1 331056..331493(-) (nucA/comI) [Bacillus amyloliquefaciens strain ZF57]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTCATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641