Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LOC22_RS18425 Genome accession   NZ_CP087390
Coordinates   3902877..3903503 (+) Length   208 a.a.
NCBI ID   WP_230239113.1    Uniprot ID   -
Organism   Enterobacter sp. AN-K1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3897877..3908503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC22_RS18405 (LOC22_18405) - 3898276..3900036 (-) 1761 WP_017384808.1 AAA family ATPase -
  LOC22_RS18410 (LOC22_18410) matP 3900223..3900675 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  LOC22_RS18415 (LOC22_18415) ompA 3900741..3901793 (-) 1053 WP_017694761.1 porin OmpA -
  LOC22_RS18420 (LOC22_18420) sulA 3902150..3902659 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  LOC22_RS18425 (LOC22_18425) sxy/tfoX 3902877..3903503 (+) 627 WP_230239113.1 TfoX/Sxy family DNA transformation protein Regulator
  LOC22_RS18430 (LOC22_18430) yccS 3903460..3905622 (-) 2163 WP_015570895.1 YccS family putative transporter -
  LOC22_RS18435 (LOC22_18435) - 3905641..3906087 (-) 447 WP_003858149.1 YccF domain-containing protein -
  LOC22_RS18440 (LOC22_18440) helD 3906210..3908264 (+) 2055 WP_230239114.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24046.69 Da        Isoelectric Point: 9.6444

>NTDB_id=629235 LOC22_RS18425 WP_230239113.1 3902877..3903503(+) (sxy/tfoX) [Enterobacter sp. AN-K1]
MKKISYDRIYQSREYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=629235 LOC22_RS18425 WP_230239113.1 3902877..3903503(+) (sxy/tfoX) [Enterobacter sp. AN-K1]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCGGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACACTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.416

97.115

0.567