Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   TthHC11_RS09695 Genome accession   NZ_AP019801
Coordinates   1779981..1781165 (-) Length   394 a.a.
NCBI ID   WP_143591728.1    Uniprot ID   -
Organism   Thermus thermophilus strain HC11     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1774981..1786165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthHC11_RS09670 (TthHC11_18830) fabZ 1775206..1775634 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  TthHC11_RS09675 (TthHC11_18840) - 1775641..1776678 (-) 1038 WP_143591723.1 rod shape-determining protein -
  TthHC11_RS09680 (TthHC11_18850) rny 1776690..1778414 (-) 1725 WP_011228936.1 ribonuclease Y -
  TthHC11_RS09685 (TthHC11_18860) recA 1778415..1779437 (-) 1023 WP_011228937.1 recombinase RecA Machinery gene
  TthHC11_RS09690 (TthHC11_18870) thpR 1779388..1779984 (-) 597 WP_143591725.1 RNA 2',3'-cyclic phosphodiesterase -
  TthHC11_RS09695 (TthHC11_18880) cinA 1779981..1781165 (-) 1185 WP_143591728.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  TthHC11_RS09700 (TthHC11_18890) - 1781138..1781914 (-) 777 WP_041443580.1 glycine cleavage system protein T -
  TthHC11_RS09705 (TthHC11_18900) - 1781954..1783003 (+) 1050 WP_143591730.1 MFS transporter -
  TthHC11_RS09710 (TthHC11_18910) - 1782996..1783622 (+) 627 WP_011228939.1 HAD family phosphatase -
  TthHC11_RS09715 (TthHC11_18920) - 1783608..1784693 (-) 1086 WP_172967297.1 enolase C-terminal domain-like protein -
  TthHC11_RS09720 (TthHC11_18930) - 1784711..1785424 (-) 714 WP_011228941.1 hypothetical protein -
  TthHC11_RS09725 (TthHC11_18940) - 1785457..1785954 (+) 498 WP_008633771.1 hypothetical protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42887.39 Da        Isoelectric Point: 8.2345

>NTDB_id=62923 TthHC11_RS09695 WP_143591728.1 1779981..1781165(-) (cinA) [Thermus thermophilus strain HC11]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRAMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPRLGLPRRPYAERVLKTWGIGESEIVERLGPLFVRGEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKKLLKE
VWGEGEMTLAEAVKKRMEREGATLSTMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=62923 TthHC11_RS09695 WP_143591728.1 1779981..1781165(-) (cinA) [Thermus thermophilus strain HC11]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGCACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAACCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGCCGGGCCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCCATG
TGGCAGGAGGTCCTGCCCCGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAGACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGGGGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAAGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAAAAGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTATCTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCTATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGAGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCCTAAGAAGCGTCTACGCGGCCTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(248-392)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

35.351

100

0.371
  cinA Streptococcus mitis SK321

35.109

100

0.368
  cinA Streptococcus pneumoniae TIGR4

35.109

100

0.368
  cinA Streptococcus pneumoniae R36A

34.867

100

0.365
  cinA Streptococcus pneumoniae Rx1

34.867

100

0.365
  cinA Streptococcus pneumoniae R6

34.867

100

0.365
  cinA Streptococcus pneumoniae D39

34.625

100

0.363

Multiple sequence alignment