Detailed information NTG0062923

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: N597_RS08305
• Genome accession: NC_022582
• Coordinates: 1736121..1738550 (-)
• Length: 809 a.a.
• NCBI ID: WP_023024642.1
• Uniprot ID: -
• Organism: Streptococcus ilei
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 1731121..1743550

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N597_RS08275 (N597_08520)	-	1731485..1732282 (-)	798	WP_023024636.1	NUDIX domain-containing protein	-
N597_RS08280 (N597_08525)	pnuC	1732283..1733065 (-)	783	WP_023024637.1	nicotinamide riboside transporter PnuC	-
N597_RS08285 (N597_08530)	-	1733078..1734136 (-)	1059	WP_023024638.1	AAA family ATPase	-
N597_RS08290 (N597_08535)	-	1734339..1735073 (-)	735	WP_023024639.1	hypothetical protein	-
N597_RS08295 (N597_08540)	-	1735236..1735640 (-)	405	WP_023024640.1	DUF4430 domain-containing protein	-
N597_RS08300 (N597_08545)	-	1735621..1736109 (-)	489	WP_023024641.1	ECF transporter S component	-
N597_RS08305 (N597_08550)	clpC	1736121..1738550 (-)	2430	WP_023024642.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
N597_RS08310 (N597_08555)	-	1738558..1739016 (-)	459	WP_023024643.1	CtsR family transcriptional regulator	-
N597_RS08315 (N597_08560)	-	1739247..1742936 (-)	3690	WP_023024644.1	alpha-L-fucosidase	-

Sequence

Protein

• Length: 809 a.a.
• Molecular weight: 89968.68 Da
• Isoelectric Point: 5.9081

>NTDB_id=62923 N597_RS08305 WP_023024642.1 1736121..1738550(-) (clpC) [Streptococcus ilei]
MNYSKALLETIEAAQILAGHFESQTLDTWHILVALANNPYSVAGSVLSDYPMQIDDFQDAAEHITGQVYQRDGRYEVFPF
SFRVEEIMKRSQEIAQAVHAKSLGTEHVLLALLLERGTLASQVLEYVGFRYDDQEEGIKIVELRKSLEQRAGWDKEAVKA
IRSLYRAQQPNRQTMGNMMGMPASTSGGLEDYTRDLTEMARNGSLEPVIGRGQEISRMIQILSRKTKNNPVLVGDAGVGK
TALALGLAQRIASGDVPTELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEEDGHVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVLIEQPSVADSIAILQGLKKTYERHHRVHITDEAIET
AVVYANRYLTSRLLPDSAIDLLDEAAATVQNKGPQAGLQSDLTAADQALLKGQWKKVAQLLKEDASPKGYQLEVKEEDIL
KTLSQLSGIPVEKLTQTAAKKYLELEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKRPIGSFLFLGPTGVGKTELAKA
LAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQANMEKRIFEELKKTYRPEFINRIDEKVVFHSLTSD
QMHEIVKIMVKPLVQSLAEKGITLKFQASALKWLATHGYDPEMGARPLRRTIQTQVEDYLAEILLRGEVAEGQTLKVGVK
SGRLNFTID

Nucleotide

• Length: 2430 bp

>NTDB_id=62923 N597_RS08305 WP_023024642.1 1736121..1738550(-) (clpC) [Streptococcus ilei]
ATGAACTATTCAAAAGCCTTATTAGAAACGATTGAAGCCGCTCAAATCTTGGCGGGTCATTTTGAGTCCCAAACGCTAGA
TACCTGGCATATCCTAGTGGCCCTAGCCAATAATCCTTATAGTGTAGCTGGTTCTGTCTTAAGTGACTATCCTATGCAGA
TTGATGATTTTCAAGATGCGGCGGAGCACATTACGGGTCAAGTCTACCAGAGGGATGGCCGCTATGAGGTGTTTCCTTTT
TCTTTCCGTGTCGAAGAAATCATGAAACGTTCCCAAGAGATTGCCCAGGCAGTCCATGCCAAAAGTCTTGGAACAGAGCA
TGTCCTCTTGGCGCTTCTTTTAGAACGGGGAACCTTGGCTTCTCAAGTATTGGAGTATGTCGGCTTCCGCTATGATGATC
AGGAAGAGGGCATTAAAATCGTCGAGCTTCGTAAGAGCTTGGAACAACGAGCAGGTTGGGACAAGGAAGCTGTCAAGGCT
ATTCGTTCGCTCTATCGGGCCCAGCAACCAAACCGTCAAACCATGGGAAATATGATGGGCATGCCAGCCTCTACCAGCGG
TGGTTTGGAAGACTACACCCGAGATTTGACAGAAATGGCTCGCAATGGCAGTTTGGAACCGGTGATTGGCCGGGGTCAAG
AAATCTCGCGGATGATTCAGATTTTGAGTCGCAAAACGAAAAATAATCCGGTCCTTGTAGGTGATGCAGGTGTCGGAAAG
ACCGCTCTAGCCTTGGGCTTGGCTCAACGGATTGCCAGCGGAGATGTCCCGACGGAACTGGCTAAAATGCGGGTCCTAGA
ATTGGACTTGATGAATGTTGTCGCAGGGACGCGGTTCCGTGGAGATTTTGAAGAGCGGATGAACAACATCATCAATGATA
TCGAAGAAGACGGCCATGTCATCCTCTTCATTGACGAGCTCCATACCATTATGGGCTCTGGCTCTGGGATTGACTCCACC
TTGGATGCGGCCAATATCTTGAAGCCAGCCTTGGCTCGCGGGACCCTACGGACCGTAGGAGCCACTACGCAAGAAGAATA
CCAAAAACACATTGAAAAAGACGCTGCTCTGTCACGCCGCTTTGCTAAGGTCTTGATTGAGCAACCCTCTGTTGCAGATA
GCATCGCGATTTTGCAAGGGCTCAAGAAGACTTATGAACGTCACCACCGTGTCCATATTACGGATGAGGCCATCGAGACA
GCTGTTGTCTATGCCAATCGTTATTTGACCAGTCGCCTCTTGCCTGACTCCGCCATTGACCTCTTGGATGAGGCGGCAGC
GACCGTGCAAAACAAGGGGCCTCAAGCCGGTCTTCAGTCCGACTTGACAGCTGCTGATCAAGCCTTGCTCAAGGGGCAAT
GGAAAAAAGTTGCTCAATTGCTAAAAGAAGATGCCAGTCCAAAAGGCTACCAGCTAGAAGTCAAGGAAGAGGATATCCTG
AAGACGCTCAGTCAATTGTCAGGCATTCCTGTGGAGAAACTAACCCAAACAGCAGCTAAGAAATACCTTGAATTGGAAGC
AGAACTTCATAAGCGCGTGATCGGTCAGGATCAGGCTGTCTCAAGTATCAGCCGAGCCATTCGCCGCAATCAGTCGGGAA
TTCGGTCTCACAAACGGCCAATTGGCTCCTTCCTCTTCCTCGGTCCGACTGGGGTCGGGAAGACTGAGCTGGCGAAGGCG
CTGGCTGAGGTCCTCTTTGATGATGAGTCCGCTTTGATCCGCTTTGATATGAGTGAATACATGGAGAAATTTGCGGCCAG
TCGTCTCAACGGAGCCCCTCCAGGCTATGTCGGTTATGAAGAAGGGGGCGAGTTGACGGAAAAAGTCCGCAACAAACCTT
ATTCAGTCCTCTTGTTTGATGAGGTGGAAAAAGCCCATCCGGATATCTTTAACGTTCTCTTGCAAGTCTTGGATGACGGT
GTTTTGACCGACAGCAAGGGACGCAAGGTAGATTTCTCCAATACCATTATTATCATGACCTCAAACTTGGGAGCTACCGC
TTTACGAGATGATAAGACGGTTGGCTTTGGAGCTAAGGATATTCGCTTTGACCAGGCCAATATGGAGAAACGCATCTTTG
AAGAGTTGAAGAAGACCTATCGACCAGAGTTTATCAACCGGATTGATGAGAAGGTTGTCTTCCATAGCTTGACCAGTGAC
CAAATGCATGAGATTGTCAAGATTATGGTGAAACCGCTGGTTCAATCTCTAGCAGAGAAAGGCATTACTCTGAAATTCCA
AGCGTCTGCTCTTAAATGGCTGGCGACTCACGGATATGATCCAGAGATGGGAGCACGTCCTTTGCGCCGAACCATCCAGA
CCCAGGTGGAAGACTACTTGGCAGAGATCCTCTTGAGAGGAGAAGTGGCTGAAGGGCAAACCCTCAAGGTAGGTGTTAAG
TCTGGTCGGCTTAACTTCACGATTGACTAG

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (370-452)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-65)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (92-132)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (717-797)

• AAA domain (Cdc48 subfamily) (AAA_2) (539-710)

• ATPase family associated with various cellular activities (AAA) (AAA) (231-363)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae Rx1	76.638	100	0.766
clpC	Streptococcus pneumoniae D39	76.638	100	0.766
clpC	Streptococcus pneumoniae TIGR4	76.638	100	0.766
clpC	Streptococcus mutans UA159	66.422	100	0.67
clpC	Streptococcus thermophilus LMG 18311	64.994	100	0.656
clpC	Streptococcus thermophilus LMD-9	64.994	100	0.656
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.798	100	0.502
clpC	Bacillus subtilis subsp. subtilis str. 168	45.668	99.876	0.456
clpE	Streptococcus mutans UA159	48.957	77.009	0.377
clpC	Lactococcus lactis subsp. cremoris KW2	46.106	79.357	0.366
clpE	Streptococcus pneumoniae Rx1	47.352	77.009	0.365
clpE	Streptococcus pneumoniae D39	47.352	77.009	0.365
clpE	Streptococcus pneumoniae R6	47.352	77.009	0.365
clpE	Streptococcus pneumoniae TIGR4	47.352	77.009	0.365