Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   N4R43_RS04655 Genome accession   NZ_CP104388
Coordinates   864691..865473 (+) Length   260 a.a.
NCBI ID   WP_023188991.1    Uniprot ID   -
Organism   Lactococcus lactis strain LJL7m20     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 859691..870473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4R43_RS04630 (N4R43_04630) vicX 859716..860528 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  N4R43_RS04635 (N4R43_04635) vicK 860697..862139 (-) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK Regulator
  N4R43_RS04640 (N4R43_04640) yycF 862132..862833 (-) 702 WP_003131580.1 response regulator YycF -
  N4R43_RS04645 (N4R43_04645) tmk 863011..863646 (+) 636 WP_012897230.1 dTMP kinase -
  N4R43_RS04650 (N4R43_04650) - 863779..864639 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  N4R43_RS04655 (N4R43_04655) yaaT 864691..865473 (+) 783 WP_023188991.1 stage 0 sporulation family protein Regulator
  N4R43_RS04660 (N4R43_04660) yabA 865466..865792 (+) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  N4R43_RS04665 (N4R43_04665) rsmI 865792..866667 (+) 876 WP_058204088.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  N4R43_RS04670 (N4R43_04670) - 866744..866935 (-) 192 WP_317141441.1 hypothetical protein -
  N4R43_RS04675 (N4R43_04675) mvk 866998..867930 (-) 933 WP_003131564.1 mevalonate kinase -
  N4R43_RS04680 (N4R43_04680) mvaD 868236..869192 (+) 957 WP_058212449.1 diphosphomevalonate decarboxylase -
  N4R43_RS04685 (N4R43_04685) - 869179..870168 (+) 990 WP_029344853.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29817.30 Da        Isoelectric Point: 6.0566

>NTDB_id=629229 N4R43_RS04655 WP_023188991.1 864691..865473(+) (yaaT) [Lactococcus lactis strain LJL7m20]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLIIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=629229 N4R43_RS04655 WP_023188991.1 864691..865473(+) (yaaT) [Lactococcus lactis strain LJL7m20]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCTAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTATCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTCGACCAAATGCA
ACTTTTTATTTCGTTTACAGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCTAAAATTCATGGTGGACTTGGACCTTGTGGACGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTGAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACCTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

45.662

84.231

0.385