Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N597_RS08110 Genome accession   NC_022582
Coordinates   1693159..1694520 (-) Length   453 a.a.
NCBI ID   WP_081697800.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1688159..1699520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS08095 (N597_08325) - 1689403..1691418 (-) 2016 WP_023024577.1 DUF2079 domain-containing protein -
  N597_RS08100 (N597_08330) - 1691595..1692092 (-) 498 WP_023024580.1 carbonic anhydrase -
  N597_RS08105 (N597_08335) - 1692381..1693076 (-) 696 WP_023024583.1 TIGR00266 family protein -
  N597_RS08110 (N597_08340) radA 1693159..1694520 (-) 1362 WP_081697800.1 DNA repair protein RadA Machinery gene
  N597_RS08115 (N597_08345) - 1694534..1695049 (-) 516 WP_023024587.1 histidine phosphatase family protein -
  N597_RS10450 - 1695074..1695274 (-) 201 Protein_1577 isochorismatase family protein -
  N597_RS10455 - 1695270..1695431 (-) 162 Protein_1578 DNA repair protein RadA -
  N597_RS08120 (N597_08350) - 1695442..1695981 (-) 540 WP_023024589.1 histidine phosphatase family protein -
  N597_RS08125 (N597_08355) - 1695983..1696429 (-) 447 WP_042507531.1 dUTP diphosphatase -
  N597_RS08130 (N597_08360) - 1696667..1697356 (-) 690 WP_023024593.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49281.73 Da        Isoelectric Point: 6.3722

>NTDB_id=62922 N597_RS08110 WP_081697800.1 1693159..1694520(-) (radA) [Streptococcus ilei]
MAKKKTTFICQNCAYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLADVTSINVHRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RLQPNFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLQGITIPDGIQAIAVSTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=62922 N597_RS08110 WP_081697800.1 1693159..1694520(-) (radA) [Streptococcus ilei]
ATCGCTAAGAAAAAAACGACATTTATTTGTCAAAATTGTGCTTATAACTCACCCAAGTATCTAGGGCGCTGTCCCAACTG
TGGTTCTTGGTCTTCCTTTGTCGAGGAGGTCGAGGTCGCAGAGGTCAAGAATGCCCGGGTGTCCTTGACAGGTGAAAAAA
CCAAACCCATGAAACTGGCGGATGTGACCTCCATCAATGTGCATCGTACCAAGACGGAGATGGAGGAATTCAACCGCGTC
CTTGGTGGCGGAGTGGTACCAGGAAGTCTGGTCCTCATCGGGGGAGATCCAGGGATTGGGAAATCGACCCTGCTCCTTCA
AGTATCGACCCAACTATCTCAAGTGGGAACGGTCCTCTACGTTAGTGGAGAAGAGTCTGCTCAGCAGATTAAACTCCGGG
CAGAGCGCTTGGGAGATATTGACAGTGAGTTTTATCTCTATGCGGAGACCAATATGCAAAGCGTGCGAGCAGAAGTGGAG
CGCCTCCAGCCTAACTTCCTTATCATTGACTCTATCCAGACTATTATGTCTCCTGAGATTTCAGGGGTGCAGGGATCGGT
TTCTCAGGTGCGGGAAGTGACGGCAGAGCTCATGCAGCTGGCTAAGACCAATAATATCGCCATCTTCATCGTTGGCCATG
TGACCAAGGAAGGAACCTTGGCAGGTCCTCGGATGTTGGAGCACATGGTGGATACAGTGCTCTACTTTGAAGGGGAGCGC
CACCATACCTTCCGGATCCTGAGAGCGGTCAAGAACCGGTTTGGATCCACCAATGAAATTGGGATTTTCGAGATGCAATC
AGGTGGGTTGGTCGAAGTCCTCAATCCTAGTCAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCTACTGGTTCTGCCATTG
TCGTTACCATGGAAGGAAGTAGACCAATCTTGGCGGAGGTCCAGGCCTTGGTGACCCCAACTGTTTTTGGAAATGCCAAG
CGGACGACGACAGGTCTTGACTTTAATCGGGTCAGCCTCATCATGGCTGTTTTAGAGAAACGTTGTGGACTTCTTCTTCA
AAATCAGGATGCCTATCTCAAGTCAGCTGGTGGTGTCAAACTGGACGAACCAGCCATTGACCTAGCCGTAGCGGTGGCCA
TTGCTTCCAGCTACAAGGAGCTTCCAACCAATCCTCAAGAGGCCTTTATCGGTGAGATTGGCTTGACTGGGGAGATTCGT
CGAGTGACTCGGATTGAGCAACGGATCAACGAAGCGGCTAAACTTGGTTTCACTAAGATTTATGCGCCAAAAAATTCTCT
CCAAGGCATCACAATCCCAGATGGTATTCAAGCGATAGCAGTCTCCACTGTAGGGGAAGTTTTGAAAAAAGTTTTTTCTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

93.598

100

0.936
  radA Streptococcus pneumoniae D39

93.598

100

0.936
  radA Streptococcus pneumoniae R6

93.598

100

0.936
  radA Streptococcus pneumoniae TIGR4

93.598

100

0.936
  radA Streptococcus mitis SK321

93.598

100

0.936
  radA Streptococcus mitis NCTC 12261

93.377

100

0.934
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

100

0.625

Multiple sequence alignment