Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LN359_RS16435 Genome accession   NZ_CP087377
Coordinates   3322775..3323404 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain RIVM_C019217     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3317775..3328404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN359_RS16420 (LN359_16425) helD 3318017..3320071 (-) 2055 WP_001550921.1 DNA helicase IV -
  LN359_RS16425 (LN359_16430) yccF 3320194..3320640 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LN359_RS16430 (LN359_16435) yccS 3320650..3322812 (+) 2163 WP_001550920.1 YccS family putative transporter -
  LN359_RS16435 (LN359_16440) sxy/tfoX 3322775..3323404 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LN359_RS16440 (LN359_16445) sulA 3323623..3324132 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  LN359_RS16445 (LN359_16450) ompA 3324489..3325541 (+) 1053 WP_000750418.1 porin OmpA -
  LN359_RS16450 (LN359_16455) matP 3325616..3326068 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LN359_RS16455 (LN359_16460) ycbZ 3326254..3328014 (+) 1761 WP_000156479.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=629150 LN359_RS16435 WP_000839153.1 3322775..3323404(-) (sxy/tfoX) [Escherichia coli strain RIVM_C019217]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=629150 LN359_RS16435 WP_000839153.1 3322775..3323404(-) (sxy/tfoX) [Escherichia coli strain RIVM_C019217]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1