Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LO000_RS00920 Genome accession   NZ_CP087354
Coordinates   192745..193899 (-) Length   384 a.a.
NCBI ID   WP_000755285.1    Uniprot ID   A0A0J1DES9
Organism   Acinetobacter baumannii strain DB002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 187745..198899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS00900 - 188906..189556 (+) 651 WP_012300783.1 TetR/AcrR family transcriptional regulator -
  LO000_RS00905 - 189662..190582 (+) 921 WP_001994180.1 DMT family transporter -
  LO000_RS00910 - 190974..191543 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  LO000_RS00915 dprA 191594..192724 (-) 1131 WP_001991425.1 DNA-processing protein DprA Machinery gene
  LO000_RS00920 tsaP 192745..193899 (-) 1155 WP_000755285.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LO000_RS00925 def 194022..194552 (+) 531 WP_001196539.1 peptide deformylase -
  LO000_RS00930 - 194589..195017 (+) 429 WP_000231981.1 DUF2946 family protein -
  LO000_RS00935 - 195090..197204 (+) 2115 WP_001120675.1 TonB-dependent copper receptor -
  LO000_RS00940 - 197258..197464 (+) 207 WP_000182542.1 hypothetical protein -
  LO000_RS00945 - 197534..198748 (-) 1215 WP_001177951.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42299.18 Da        Isoelectric Point: 8.5790

>NTDB_id=629093 LO000_RS00920 WP_000755285.1 192745..193899(-) (tsaP) [Acinetobacter baumannii strain DB002]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLENIKQWLE
NSTILPADSITNTPYVVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGVELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=629093 LO000_RS00920 WP_000755285.1 192745..193899(-) (tsaP) [Acinetobacter baumannii strain DB002]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTGAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGCTACACTGGGCAAACCACAAACC
TGCAACCTCAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCTGTTATTCCACTTGAAAATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATGTGGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACCATTTACGCACGAGGACAAGGCTTAATTAATGGGCAACGTTATGCCGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGGTTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTACCAACACTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTGATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1DES9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.698

100

0.987