Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LO008_RS15275 Genome accession   NZ_CP087351
Coordinates   3129535..3130170 (+) Length   211 a.a.
NCBI ID   WP_000472273.1    Uniprot ID   A0A9P3CZD1
Organism   Acinetobacter baumannii strain DB003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3124535..3135170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO008_RS15260 adeT2 3125595..3126581 (-) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  LO008_RS15265 - 3126661..3127476 (-) 816 WP_000547775.1 NAD-dependent epimerase/dehydratase family protein -
  LO008_RS15270 recG 3127497..3129542 (+) 2046 WP_000204955.1 ATP-dependent DNA helicase RecG -
  LO008_RS15275 comF 3129535..3130170 (+) 636 WP_000472273.1 ComF family protein Machinery gene
  LO008_RS15280 - 3130173..3130574 (-) 402 WP_000849702.1 NUDIX domain-containing protein -
  LO008_RS15285 - 3130589..3131170 (-) 582 WP_001084312.1 TIGR00730 family Rossman fold protein -
  LO008_RS15290 - 3131327..3132340 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  LO008_RS15295 - 3132410..3132697 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  LO008_RS15300 - 3132709..3133350 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  LO008_RS15305 - 3133377..3134057 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LO008_RS15310 mlaE 3134057..3134836 (-) 780 WP_001091947.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24565.69 Da        Isoelectric Point: 9.7140

>NTDB_id=629062 LO008_RS15275 WP_000472273.1 3129535..3130170(+) (comF) [Acinetobacter baumannii strain DB003]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=629062 LO008_RS15275 WP_000472273.1 3129535..3130170(+) (comF) [Acinetobacter baumannii strain DB003]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGAGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAATCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAACAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

100

100

1
  comF Acinetobacter baumannii D1279779

99.052

100

0.991