Detailed information NTG0629019

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: N4269_RS13115
• Genome accession: NZ_CP104356
• Coordinates: 2879456..2881291 (-)
• Length: 611 a.a.
• NCBI ID: WP_134987357.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain PNUSAV001141
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2874456..2886291

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4269_RS13095 (N4269_13095)	fhuA	2874532..2876631 (-)	2100	WP_260813116.1	TonB-dependent siderophore receptor FhuA	-
N4269_RS13100 (N4269_13100)	-	2876766..2878595 (+)	1830	WP_260813117.1	ABC transporter ATP-binding protein	-
N4269_RS13105 (N4269_13105)	-	2878631..2878993 (-)	363	WP_001235441.1	hypothetical protein	-
N4269_RS13110 (N4269_13110)	-	2879164..2879463 (-)	300	WP_000807266.1	DUF3630 family protein	-
N4269_RS13115 (N4269_13115)	recQ	2879456..2881291 (-)	1836	WP_134987357.1	ATP-dependent DNA helicase RecQ	Machinery gene
N4269_RS13120 (N4269_13120)	rarD	2881518..2882360 (+)	843	WP_001889839.1	EamA family transporter RarD	-
N4269_RS13125 (N4269_13125)	ggt	2882534..2884288 (+)	1755	WP_260813118.1	gamma-glutamyltransferase	-
N4269_RS13130 (N4269_13130)	-	2884445..2885248 (+)	804	WP_000381934.1	AraC family transcriptional regulator	-
N4269_RS13135 (N4269_13135)	-	2885323..2885991 (+)	669	WP_134986784.1	LysE family translocator	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69138.41 Da
• Isoelectric Point: 7.1164

>NTDB_id=629019 N4269_RS13115 WP_134987357.1 2879456..2881291(-) (recQ) [Vibrio cholerae strain PNUSAV001141]
MTATLMAESSAPSVTPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLTREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAVRAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide

• Length: 1836 bp

>NTDB_id=629019 N4269_RS13115 WP_134987357.1 2879456..2881291(-) (recQ) [Vibrio cholerae strain PNUSAV001141]
ATGACCGCGACCTTAATGGCTGAATCTTCTGCTCCCTCCGTGACTCCTGAACGTGTTTTACACGAGGTGTTTGGCTATCA
GCAATTTCGCGTTGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCACTCTGTTACCAGATCCCTGCTTTGGTATTAGAAGGGGTCACCTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAATGGTGTGGCGGCAGAGTGCGTGAATTCCACGTTGACGCGCGAGGAGCT
GATCGCGATTTACAATCGCATGCACGCAGGGCAGCTCAAGCTGTTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAGCGTCTTAGCCATCTGCCTTTAGCTATGATTGCGGTCGATGAAGCGCATTGTATTTCGCAATGGGGACACGAT
TTTCGCCCTGAGTACGCTTCGTTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACGCGTCACGACATCATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGTTTTGATCGCC
CGAATATTCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCGCAAGTGATTCGTTATCTGGAAACTCAACGCGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTGGAAATGCTTACCGAAAAGCTGTGCGGCAACCATATTCGCGCCGC
CAGTTACCATGCCGGGATGGACGCCGATGAACGCGCTTGGGTGCAAGAGGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACTGTGGCGTTTGGCATGGGGATCAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCTTACTATCAGGAAACGGGCCGCGCAGGGCGTGATGGTCTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCCGA
CATGAACTGGCTGCGCCGCATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTTGAAAGCCACAAACTCACTGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTGTTGCTCAATTATTTTGGCGAATATCGCGATAAGCCATGT
GGTAACTGCGATATCTGTCTCGACCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCACGCAAAGCCTTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGTTATGTGGTGGAAGTGCTGCGCGGGATGCAGAACATCCGTATTCGCGAGCATG
GCCACGACAAAATCACCACCTACGGCATTGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGTAACTCGACGTTGCAACTGACTGAAGAAGCGCGCCCTTTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGTGCGCGCGGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGATGAAGGCTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCAACCTCTTACGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

• RQC domain (RQC) (409-517)

• DEAD/DEAH box helicase (DEAD) (33-188)

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

• Helicase conserved C-terminal domain (Helicase_C) (229-333)

• HRDC domain (HRDC) (537-603)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.641	97.054	0.394