Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LO011_RS15975 Genome accession   NZ_CP087340
Coordinates   3301448..3302332 (-) Length   294 a.a.
NCBI ID   WP_000914774.1    Uniprot ID   N9LGJ0
Organism   Acinetobacter baumannii strain DB008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3296448..3307332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS15960 miaB 3298295..3299746 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LO011_RS15965 - 3299784..3300872 (+) 1089 WP_000122983.1 PhoH family protein -
  LO011_RS15970 ybeY 3300882..3301358 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  LO011_RS15975 tonB2 3301448..3302332 (-) 885 WP_000914774.1 energy transducer TonB Machinery gene
  LO011_RS15980 - 3302563..3303234 (+) 672 WP_001193958.1 hypothetical protein -
  LO011_RS15985 - 3303392..3304105 (+) 714 WP_000201548.1 DUF3108 domain-containing protein -
  LO011_RS15990 - 3304178..3304753 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  LO011_RS15995 wrbA 3304806..3305399 (-) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  LO011_RS16000 - 3305687..3306934 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33622.48 Da        Isoelectric Point: 9.0935

>NTDB_id=628935 LO011_RS15975 WP_000914774.1 3301448..3302332(-) (tonB2) [Acinetobacter baumannii strain DB008]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=628935 LO011_RS15975 WP_000914774.1 3301448..3302332(-) (tonB2) [Acinetobacter baumannii strain DB008]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LGJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

100

100

1