Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LO011_RS01470 Genome accession   NZ_CP087340
Coordinates   303545..303871 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain DB008     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 298545..308871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO011_RS01445 hemC 299162..300079 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  LO011_RS01450 - 300084..300851 (+) 768 WP_049590754.1 uroporphyrinogen-III synthase -
  LO011_RS01455 - 300860..301699 (+) 840 WP_258579492.1 hypothetical protein -
  LO011_RS01460 - 301709..302902 (+) 1194 Protein_279 heme biosynthesis protein HemY -
  LO011_RS01465 - 302910..303350 (+) 441 WP_258579493.1 thioesterase family protein -
  LO011_RS01470 hns 303545..303871 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  LO011_RS01475 gspN 304204..304947 (+) 744 WP_000730343.1 type II secretion system protein N -
  LO011_RS01480 - 304947..305783 (+) 837 WP_000870027.1 type II secretion system protein N -
  LO011_RS01485 gspD 305825..308095 (+) 2271 WP_258579494.1 type II secretion system secretin GspD -
  LO011_RS01490 - 308136..308765 (+) 630 WP_032038584.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=628913 LO011_RS01470 WP_000801427.1 303545..303871(+) (hns) [Acinetobacter baumannii strain DB008]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=628913 LO011_RS01470 WP_000801427.1 303545..303871(+) (hns) [Acinetobacter baumannii strain DB008]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1