Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LO010_RS17830 Genome accession   NZ_CP087335
Coordinates   3704990..3705316 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain DB053     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3699990..3710316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS17810 - 3700098..3700727 (-) 630 WP_032001156.1 FHA domain-containing protein -
  LO010_RS17815 gspD 3700768..3703038 (-) 2271 WP_258580294.1 type II secretion system secretin GspD -
  LO010_RS17820 - 3703080..3703916 (-) 837 WP_000870031.1 type II secretion system protein N -
  LO010_RS17825 gspN 3703916..3704659 (-) 744 WP_000730343.1 type II secretion system protein N -
  LO010_RS17830 hns 3704990..3705316 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  LO010_RS17835 - 3705511..3705951 (-) 441 WP_000661569.1 thioesterase family protein -
  LO010_RS17840 - 3705959..3707152 (-) 1194 WP_000681780.1 membrane protein -
  LO010_RS17845 - 3707162..3708001 (-) 840 WP_001230193.1 hypothetical protein -
  LO010_RS17850 - 3708010..3708777 (-) 768 WP_000897416.1 uroporphyrinogen-III synthase -
  LO010_RS17855 hemC 3708782..3709699 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=628898 LO010_RS17830 WP_000801427.1 3704990..3705316(-) (hns) [Acinetobacter baumannii strain DB053]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=628898 LO010_RS17830 WP_000801427.1 3704990..3705316(-) (hns) [Acinetobacter baumannii strain DB053]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1