Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LO010_RS02510 Genome accession   NZ_CP087335
Coordinates   515613..516497 (+) Length   294 a.a.
NCBI ID   WP_000914772.1    Uniprot ID   A0A245ZX16
Organism   Acinetobacter baumannii strain DB053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510613..521497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO010_RS02485 - 511011..512258 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  LO010_RS02490 wrbA 512546..513139 (+) 594 WP_258580371.1 NAD(P)H:quinone oxidoreductase -
  LO010_RS02495 - 513192..513767 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  LO010_RS02500 - 513840..514553 (-) 714 WP_000201542.1 DUF3108 domain-containing protein -
  LO010_RS02505 - 514711..515382 (-) 672 WP_001193955.1 hypothetical protein -
  LO010_RS02510 tonB2 515613..516497 (+) 885 WP_000914772.1 energy transducer TonB Machinery gene
  LO010_RS02515 ybeY 516587..517063 (-) 477 WP_000703567.1 rRNA maturation RNase YbeY -
  LO010_RS02520 - 517073..518161 (-) 1089 WP_000122983.1 PhoH family protein -
  LO010_RS02525 miaB 518199..519650 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33596.51 Da        Isoelectric Point: 9.4087

>NTDB_id=628874 LO010_RS02510 WP_000914772.1 515613..516497(+) (tonB2) [Acinetobacter baumannii strain DB053]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPAPMPSDASTGEAQLETLEKMQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=628874 LO010_RS02510 WP_000914772.1 515613..516497(+) (tonB2) [Acinetobacter baumannii strain DB053]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAATGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A245ZX16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993