Detailed information NTG0628855

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: N4267_RS00635
• Genome accession: NZ_CP104354
• Coordinates: 129599..130774 (+)
• Length: 391 a.a.
• NCBI ID: WP_000136713.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain PNUSAV001140
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 124599..135774

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4267_RS00600 (N4267_00600)	-	125436..125906 (-)	471	WP_000224703.1	Dps family protein	-
N4267_RS00605 (N4267_00605)	-	126076..126405 (-)	330	WP_001117042.1	DUF2500 domain-containing protein	-
N4267_RS00610 (N4267_00610)	-	126610..126978 (+)	369	WP_001289435.1	DUF4145 domain-containing protein	-
N4267_RS00615 (N4267_00615)	-	127481..127693 (+)	213	WP_260813121.1	hypothetical protein	-
N4267_RS00620 (N4267_00620)	-	127855..128484 (+)	630	WP_001961903.1	lysoplasmalogenase	-
N4267_RS00625 (N4267_00625)	-	128533..128799 (-)	267	WP_000645840.1	DUF1145 domain-containing protein	-
N4267_RS00630 (N4267_00630)	rsmD	128796..129395 (-)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
N4267_RS00635 (N4267_00635)	pilA	129599..130774 (+)	1176	WP_000136713.1	signal recognition particle-docking protein FtsY	Machinery gene
N4267_RS00640 (N4267_00640)	ftsE	130823..131497 (+)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
N4267_RS00645 (N4267_00645)	ftsX	131487..132479 (+)	993	WP_000279340.1	permease-like cell division protein FtsX	-
N4267_RS00650 (N4267_00650)	rpoH	132649..133509 (+)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
N4267_RS00655 (N4267_00655)	sthA	133710..135110 (-)	1401	WP_000529898.1	Si-specific NAD(P)(+) transhydrogenase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 42818.50 Da
• Isoelectric Point: 4.4484

>NTDB_id=628855 N4267_RS00635 WP_000136713.1 129599..130774(+) (pilA) [Vibrio cholerae strain PNUSAV001140]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQAETALTETETETETETETETETETETVEPARIVE
QEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTAKASRQQLRDGEAL
YGLLKEEMAEILSQVEQPLLIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGER
NQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQN
AISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1176 bp

>NTDB_id=628855 N4267_RS00635 WP_000136713.1 129599..130774(+) (pilA) [Vibrio cholerae strain PNUSAV001140]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTAGCGATTCAAGCGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGTTGAACCTGCACGTATTGTTGAA
CAAGAAAAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGTCGCACCAAAGCGAATATTGGCGCTGGCTT
CTTTGGCCTGTTTAAAGGCAAAAAAATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCGATGTCG
GCATGGATACGACCAGCAAAATCATCGCTAATTTGACCGCCAAAGCTTCTCGCCAGCAACTGCGTGATGGGGAAGCGCTG
TACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGTTGATCGACACTGAGAAAAAACC
TTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAACAGTTCCAAGCGC
AAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGT
AATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGCGAAAGC
GCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGTCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGCGCAAGA
TTGTTCGCGTGATGAAGAAGATTGATGACAGCGCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGACAAAAC
GCTATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCACCGCTAA
AGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTGACGACT
TACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (107-168)

• SRP54-type protein, GTPase domain (SRP54) (188-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.708	87.468	0.435