Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LO004_RS18445 Genome accession   NZ_CP087331
Coordinates   3860140..3860466 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain LMG994     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3855140..3865466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS18425 - 3855246..3855875 (-) 630 WP_000219971.1 FHA domain-containing protein -
  LO004_RS18430 gspD 3855916..3858186 (-) 2271 WP_001196431.1 type II secretion system secretin GspD -
  LO004_RS18435 - 3858228..3859064 (-) 837 WP_000870027.1 type II secretion system protein N -
  LO004_RS18440 gspN 3859064..3859807 (-) 744 WP_000730343.1 type II secretion system protein N -
  LO004_RS18445 hns 3860140..3860466 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  LO004_RS18450 - 3860661..3861101 (-) 441 WP_000661569.1 thioesterase family protein -
  LO004_RS18455 - 3861109..3862302 (-) 1194 WP_000681775.1 membrane protein -
  LO004_RS18460 - 3862312..3863151 (-) 840 WP_001230194.1 hypothetical protein -
  LO004_RS18465 - 3863160..3863927 (-) 768 WP_000897423.1 uroporphyrinogen-III synthase -
  LO004_RS18470 hemC 3863932..3864849 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=628854 LO004_RS18445 WP_000801427.1 3860140..3860466(-) (hns) [Acinetobacter baumannii strain LMG994]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=628854 LO004_RS18445 WP_000801427.1 3860140..3860466(-) (hns) [Acinetobacter baumannii strain LMG994]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1