Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LO004_RS16765 Genome accession   NZ_CP087331
Coordinates   3497524..3497934 (-) Length   136 a.a.
NCBI ID   WP_031986007.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LMG994     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3492524..3502934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS16735 - 3492610..3492879 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  LO004_RS16740 rapZ 3492876..3493727 (-) 852 WP_000821671.1 RNase adapter RapZ -
  LO004_RS16745 panC 3493750..3494598 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  LO004_RS16750 panB 3494602..3495411 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  LO004_RS16755 folK 3495457..3495939 (-) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LO004_RS16760 pcnB 3495936..3497399 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  LO004_RS16765 comEA 3497524..3497934 (-) 411 WP_031986007.1 ComEA family DNA-binding protein Machinery gene
  LO004_RS16770 mazG 3497903..3498709 (-) 807 WP_000359490.1 nucleoside triphosphate pyrophosphohydrolase -
  LO004_RS16775 - 3498821..3499594 (+) 774 WP_000682846.1 SDR family oxidoreductase -
  LO004_RS16780 - 3499639..3501945 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15650.89 Da        Isoelectric Point: 10.3828

>NTDB_id=628845 LO004_RS16765 WP_031986007.1 3497524..3497934(-) (comEA) [Acinetobacter baumannii strain LMG994]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQIYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=628845 LO004_RS16765 WP_031986007.1 3497524..3497934(-) (comEA) [Acinetobacter baumannii strain LMG994]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATATATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404