Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LO004_RS08640 Genome accession   NZ_CP087331
Coordinates   1818109..1819158 (-) Length   349 a.a.
NCBI ID   WP_000344167.1    Uniprot ID   A0A009SQ18
Organism   Acinetobacter baumannii strain LMG994     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1813109..1824158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS08605 - 1813351..1813854 (+) 504 WP_001037943.1 OmpH family outer membrane protein -
  LO004_RS08610 lpxD 1813859..1814929 (+) 1071 WP_000868103.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  LO004_RS08615 fabZ 1814936..1815421 (+) 486 WP_000140523.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LO004_RS08620 lpxA 1815418..1816206 (+) 789 WP_000064877.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  LO004_RS08625 - 1816261..1817145 (-) 885 WP_001178068.1 YbgF trimerization domain-containing protein -
  LO004_RS08635 - 1817573..1818055 (-) 483 WP_000476756.1 regulatory protein RecX -
  LO004_RS08640 recA 1818109..1819158 (-) 1050 WP_000344167.1 recombinase RecA Machinery gene
  LO004_RS08645 - 1819304..1819744 (-) 441 WP_000040963.1 RNA-binding S4 domain-containing protein -
  LO004_RS08650 - 1819728..1820414 (-) 687 WP_001045475.1 HAD-IA family hydrolase -
  LO004_RS08655 - 1820586..1820945 (+) 360 WP_000798370.1 YcgJ family protein -
  LO004_RS08660 - 1821044..1821280 (+) 237 WP_000525041.1 hypothetical protein -
  LO004_RS08665 - 1821395..1821688 (+) 294 WP_000689660.1 hypothetical protein -
  LO004_RS08670 - 1821740..1822276 (-) 537 WP_000573225.1 GNAT family N-acetyltransferase -
  LO004_RS08675 gigD 1822322..1822771 (-) 450 Protein_1673 Lrp/AsnC family transcriptional regulator GigD -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37904.25 Da        Isoelectric Point: 4.7769

>NTDB_id=628836 LO004_RS08640 WP_000344167.1 1818109..1819158(-) (recA) [Acinetobacter baumannii strain LMG994]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENNQIAEEIER
NIREQLLTTGTNGAVQIEDEEEPDLLLES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=628836 LO004_RS08640 WP_000344167.1 1818109..1819158(-) (recA) [Acinetobacter baumannii strain LMG994]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGCCAAATTGAGAAGCAATTTGGTAAAAATACGGTTATGCG
TCTTGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACATTGCAAGCAATTGCT
CAATGTCAAAAATCTGGTGGTACATGTGCCTTCATTGATGCTGAGCACGCCCTAGACCCTCAATATGCACGCAAGCTTGG
TGTAGATATTGATAACCTACTTGTTTCACAACCCGACAATGGTGAGCAAGCACTTGAAATTGCTGACATGCTTGTCCGTT
CAGGCGCAATTGATTTAATCGTTGTGGACTCGGTAGCTGCACTTACCCCTAAAGCAGAAATCGAAGGTGAGATGGGTGAC
TCTCATATGGGTCTACAAGCGCGTCTTATGAGCCAGGCACTTCGTAAAATTACGGGTAATGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAGATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACTACCACTGGTGGTAATGCTC
TTAAATTCTACGCTTCAGTTCGTTTAGATATTCGTCGTATCGGTCAAGTAAAAGAAGGCGATGAAATTGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAGAACAAAATGGCTCCTCCGTTTAAAGAAGCTATTTTCCAAATTCTATACGGTAAAGGTAC
TAACCAACTAGGTGAACTTGTAGATTTAGCAGTACAACAGGACATCGTACAGAAAGCTGGTGCATGGTATTCATATCAAG
GCAATAAAATTGGTCAAGGTAAAAACAATGTAATTCGCTATTTTGAAGAAAATAATCAAATAGCTGAAGAAATTGAACGT
AATATCCGTGAACAATTGCTGACTACAGGCACAAATGGTGCAGTTCAAATTGAAGATGAAGAAGAGCCAGATCTTTTATT
AGAATCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SQ18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

100

100

1
  recA Acinetobacter baylyi ADP1

93.084

99.427

0.926
  recA Pseudomonas stutzeri DSM 10701

75.602

95.129

0.719
  recA Vibrio cholerae strain A1552

73.7

93.696

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.696

0.691
  recA Ralstonia pseudosolanacearum GMI1000

70.517

94.269

0.665
  recA Glaesserella parasuis strain SC1401

71.605

92.837

0.665
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae strain FA1090

65.517

99.713

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.808

98.281

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

94.842

0.605
  recA Helicobacter pylori strain NCTC11637

64.22

93.696

0.602
  recA Helicobacter pylori 26695

63.914

93.696

0.599
  recA Streptococcus pyogenes NZ131

58.924

100

0.596
  recA Streptococcus mitis SK321

60.411

97.708

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.883

93.41

0.587
  recA Streptococcus mitis NCTC 12261

61.963

93.41

0.579
  recA Streptococcus pneumoniae Rx1

61.963

93.41

0.579
  recA Streptococcus pneumoniae D39

61.963

93.41

0.579
  recA Streptococcus pneumoniae R6

61.963

93.41

0.579
  recA Streptococcus pneumoniae TIGR4

61.963

93.41

0.579
  recA Streptococcus mutans UA159

61.585

93.983

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.264

0.576
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.55

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.977

0.539