Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LO004_RS02530 Genome accession   NZ_CP087331
Coordinates   531312..531737 (+) Length   141 a.a.
NCBI ID   WP_000788338.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LMG994     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 526312..536737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO004_RS02520 pilY1 526966..530820 (+) 3855 WP_000768945.1 PilC/PilY family type IV pilus protein Machinery gene
  LO004_RS02525 pilY2 530833..531315 (+) 483 WP_001046419.1 type IV pilin protein Machinery gene
  LO004_RS02530 pilE 531312..531737 (+) 426 WP_000788338.1 type IV pilin protein Machinery gene
  LO004_RS02535 rpsP 531884..532135 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  LO004_RS02540 rimM 532155..532703 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  LO004_RS02545 trmD 532749..533489 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LO004_RS02550 rplS 533697..534065 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  LO004_RS02555 - 534119..535060 (-) 942 WP_086261923.1 triacylglycerol lipase -
  LO004_RS02560 - 535175..536209 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15193.39 Da        Isoelectric Point: 7.8144

>NTDB_id=628828 LO004_RS02530 WP_000788338.1 531312..531737(+) (pilE) [Acinetobacter baumannii strain LMG994]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFTTLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=628828 LO004_RS02530 WP_000788338.1 531312..531737(+) (pilE) [Acinetobacter baumannii strain LMG994]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACCTTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCGACCATACAGTCAATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTACAACTCTAAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCCCTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

91.489

100

0.915
  comF Acinetobacter baylyi ADP1

49.286

99.291

0.489