Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N4T38_RS09085 Genome accession   NZ_CP104351
Coordinates   1805447..1806082 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain 2021CK-01335     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1800447..1811082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T38_RS09060 (N4T38_09060) - 1801287..1802300 (+) 1014 WP_001097113.1 aminoglycoside phosphotransferase family protein -
  N4T38_RS09065 (N4T38_09065) murU 1802300..1802989 (+) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  N4T38_RS09070 (N4T38_09070) rsmG 1803077..1803709 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  N4T38_RS09075 (N4T38_09075) - 1803731..1804513 (+) 783 WP_000057217.1 ParA family protein -
  N4T38_RS09080 (N4T38_09080) - 1804510..1805397 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  N4T38_RS09085 (N4T38_09085) exbB 1805447..1806082 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N4T38_RS09090 (N4T38_09090) - 1806098..1806526 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  N4T38_RS09095 (N4T38_09095) msbA 1806523..1808250 (+) 1728 WP_001070723.1 lipid A export permease/ATP-binding protein MsbA -
  N4T38_RS09100 (N4T38_09100) lpxK 1808253..1809263 (+) 1011 WP_000050466.1 tetraacyldisaccharide 4'-kinase -
  N4T38_RS09105 (N4T38_09105) kdsB 1809273..1810034 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N4T38_RS09110 (N4T38_09110) - 1810046..1811026 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=628812 N4T38_RS09085 WP_000264037.1 1805447..1806082(+) (exbB) [Acinetobacter baumannii strain 2021CK-01335]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=628812 N4T38_RS09085 WP_000264037.1 1805447..1806082(+) (exbB) [Acinetobacter baumannii strain 2021CK-01335]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTGTTAATGAATGATGGTAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCCATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393