Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LOZ98_RS17555 Genome accession   NZ_CP087328
Coordinates   3581864..3582190 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain OC074     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3576864..3587190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ98_RS17535 - 3576965..3577594 (-) 630 WP_000219964.1 FHA domain-containing protein -
  LOZ98_RS17540 gspD 3577635..3579911 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  LOZ98_RS17545 - 3579953..3580789 (-) 837 WP_000870031.1 type II secretion system protein N -
  LOZ98_RS17550 gspN 3580789..3581532 (-) 744 WP_000730343.1 type II secretion system protein N -
  LOZ98_RS17555 hns 3581864..3582190 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  LOZ98_RS17560 - 3582385..3582825 (-) 441 WP_000661569.1 thioesterase family protein -
  LOZ98_RS17565 - 3582833..3584026 (-) 1194 WP_000681773.1 hypothetical protein -
  LOZ98_RS17570 - 3584036..3584875 (-) 840 WP_004737894.1 hypothetical protein -
  LOZ98_RS17575 - 3584884..3585651 (-) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  LOZ98_RS17580 hemC 3585656..3586573 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=628802 LOZ98_RS17555 WP_000801427.1 3581864..3582190(-) (hns) [Acinetobacter baumannii strain OC074]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=628802 LOZ98_RS17555 WP_000801427.1 3581864..3582190(-) (hns) [Acinetobacter baumannii strain OC074]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1