Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LOZ98_RS10520 Genome accession   NZ_CP087328
Coordinates   2113814..2114194 (-) Length   126 a.a.
NCBI ID   WP_004738906.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC074     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2108814..2119194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ98_RS10490 tadA 2108933..2109436 (-) 504 WP_031946509.1 tRNA adenosine(34) deaminase TadA -
  LOZ98_RS10495 - 2109443..2110567 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LOZ98_RS10500 ung 2110564..2111277 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  LOZ98_RS10505 - 2111328..2111924 (-) 597 WP_004738911.1 6-carboxytetrahydropterin synthase -
  LOZ98_RS10510 gspK 2112154..2113113 (-) 960 WP_000301477.1 type II secretion system minor pseudopilin GspK -
  LOZ98_RS10515 xcpW 2113113..2113814 (-) 702 WP_000594574.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LOZ98_RS10520 xcpV 2113814..2114194 (-) 381 WP_004738906.1 type II secretion system minor pseudopilin GspI Machinery gene
  LOZ98_RS10525 - 2114184..2114738 (-) 555 WP_000841379.1 type II secretion system protein -
  LOZ98_RS10530 - 2114748..2115356 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LOZ98_RS10535 - 2115394..2116167 (-) 774 WP_000497298.1 TatD family hydrolase -
  LOZ98_RS10540 - 2116185..2116526 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  LOZ98_RS10545 - 2116538..2117518 (-) 981 WP_001075418.1 DNA polymerase III subunit delta' -
  LOZ98_RS10550 kdsB 2117530..2118291 (-) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13973.21 Da        Isoelectric Point: 9.8004

>NTDB_id=628786 LOZ98_RS10520 WP_004738906.1 2113814..2114194(-) (xcpV) [Acinetobacter baumannii strain OC074]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISLNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=628786 LOZ98_RS10520 WP_004738906.1 2113814..2114194(-) (xcpV) [Acinetobacter baumannii strain OC074]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCTGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

98.413

100

0.984