Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LO013_RS02785 Genome accession   NZ_CP087325
Coordinates   565581..566465 (+) Length   294 a.a.
NCBI ID   WP_002125537.1    Uniprot ID   A0A062IEN6
Organism   Acinetobacter baumannii strain OC073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 560581..571465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO013_RS02760 - 560979..562226 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  LO013_RS02765 wrbA 562514..563107 (+) 594 WP_002125540.1 NAD(P)H:quinone oxidoreductase -
  LO013_RS02770 - 563160..563735 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  LO013_RS02775 - 563808..564521 (-) 714 WP_000201548.1 DUF3108 domain-containing protein -
  LO013_RS02780 - 564679..565350 (-) 672 WP_001193957.1 hypothetical protein -
  LO013_RS02785 tonB2 565581..566465 (+) 885 WP_002125537.1 energy transducer TonB Machinery gene
  LO013_RS02790 ybeY 566555..567031 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  LO013_RS02795 - 567041..568129 (-) 1089 WP_000122983.1 PhoH family protein -
  LO013_RS02800 miaB 568167..569618 (-) 1452 WP_002125580.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33630.51 Da        Isoelectric Point: 9.0947

>NTDB_id=628732 LO013_RS02785 WP_002125537.1 565581..566465(+) (tonB2) [Acinetobacter baumannii strain OC073]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIHPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQNFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=628732 LO013_RS02785 WP_002125537.1 565581..566465(+) (tonB2) [Acinetobacter baumannii strain OC073]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCATCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCATCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGC
CTTGAAGCTCAGTATTTACAACGTCAGCAAAATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
AAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCATTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062IEN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.98

100

0.99