Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | LO012_RS09500 | Genome accession | NZ_CP087317 |
| Coordinates | 1959990..1960370 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836914.1 | Uniprot ID | A0A098SJS3 |
| Organism | Acinetobacter baumannii strain OC064 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1954990..1965370
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LO012_RS09470 | kdsB | 1955893..1956654 (+) | 762 | WP_000680692.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| LO012_RS09475 | - | 1956666..1957646 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| LO012_RS09480 | - | 1957658..1957999 (+) | 342 | WP_001183027.1 | PilZ domain-containing protein | - |
| LO012_RS09485 | - | 1958017..1958790 (+) | 774 | WP_000497300.1 | TatD family hydrolase | - |
| LO012_RS09490 | - | 1958828..1959436 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| LO012_RS09495 | - | 1959446..1960000 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| LO012_RS09500 | xcpV | 1959990..1960370 (+) | 381 | WP_000836914.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| LO012_RS09505 | xcpW | 1960370..1961071 (+) | 702 | WP_000594579.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| LO012_RS09510 | gspK | 1961071..1962030 (+) | 960 | WP_000301478.1 | type II secretion system minor pseudopilin GspK | - |
| LO012_RS09515 | - | 1962260..1962856 (+) | 597 | WP_000908449.1 | 6-carboxytetrahydropterin synthase | - |
| LO012_RS09520 | ung | 1962907..1963620 (+) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| LO012_RS09525 | - | 1963617..1964741 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| LO012_RS09530 | tadA | 1964748..1965251 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14074.34 Da Isoelectric Point: 10.0341
>NTDB_id=628657 LO012_RS09500 WP_000836914.1 1959990..1960370(+) (xcpV) [Acinetobacter baumannii strain OC064]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=628657 LO012_RS09500 WP_000836914.1 1959990..1960370(+) (xcpV) [Acinetobacter baumannii strain OC064]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATC
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATC
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |