Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   CENROD_RS06230 Genome accession   NC_022576
Coordinates   1515397..1516491 (-) Length   364 a.a.
NCBI ID   WP_041193331.1    Uniprot ID   -
Organism   Candidatus Symbiobacter mobilis CR     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1510397..1521491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CENROD_RS06210 (Cenrod_1375) - 1511444..1512643 (-) 1200 WP_022772808.1 hypothetical protein -
  CENROD_RS06215 (Cenrod_1376) epsA 1512775..1513551 (-) 777 WP_022772812.1 XrtB/PEP-CTERM-associated transcriptional regulator EpsA -
  CENROD_RS13895 (Cenrod_1377) - 1513762..1514325 (-) 564 WP_022772814.1 FxDxF family PEP-CTERM protein -
  CENROD_RS06225 (Cenrod_1378) - 1514669..1515349 (-) 681 WP_022772817.1 alpha/beta hydrolase -
  CENROD_RS06230 (Cenrod_1379) pilA 1515397..1516491 (-) 1095 WP_041193331.1 signal recognition particle-docking protein FtsY Machinery gene
  CENROD_RS06235 (Cenrod_1380) - 1516606..1518657 (+) 2052 WP_022772823.1 YgiQ family radical SAM protein -
  CENROD_RS06240 (Cenrod_1381) - 1518891..1520396 (-) 1506 WP_022771644.1 ISNCY-like element ISSymo1 family transposase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38242.10 Da        Isoelectric Point: 6.1552

>NTDB_id=62862 CENROD_RS06230 WP_041193331.1 1515397..1516491(-) (pilA) [Candidatus Symbiobacter mobilis CR]
MFRFFRKKIAPPPDTPQGTPSSASLPPVGGATVAGAVVDRVVGRVIDGSVGTVAGTVMDTVAEPAARVGWIARLREGLRK
TSSSIASVFVRVHIDDALYDALEEALLLADAGVSASTHLLDELRKRVRSARATDPAAVRELLVAACEDLLRPLQKPLEIG
MDTPTVIMMVGVNGAGKTTSIGKLTRRLAQEGATVLLAAGDTFRAAAREQLGVWADRNTVDIVGQIGGDPAAVAFDAVQA
GAARGCDVVLVDTAGRLPTQLHLMEELKKVRRVVQKAMPTAPHEVILVLDGNTGQNALAQVRAFDDALGLTGLIVTKLDG
TAKGGVLAAIARERPIPVYFIGVGEQLEDLETFDAREFAQALLA

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=62862 CENROD_RS06230 WP_041193331.1 1515397..1516491(-) (pilA) [Candidatus Symbiobacter mobilis CR]
ATGTTTCGCTTCTTCCGCAAAAAAATTGCCCCACCACCGGATACACCGCAGGGGACTCCATCAAGCGCGTCATTGCCACC
AGTTGGAGGCGCGACGGTGGCTGGCGCTGTGGTGGATAGGGTGGTCGGTAGGGTGATCGATGGGTCGGTCGGTACCGTTG
CCGGTACTGTGATGGATACGGTGGCCGAGCCTGCGGCGCGTGTCGGTTGGATCGCCCGGCTACGCGAAGGGTTGCGAAAA
ACCAGTTCCAGCATTGCCAGCGTCTTCGTTCGCGTCCATATCGACGATGCCTTGTACGACGCGCTGGAAGAAGCACTCCT
CTTGGCCGACGCAGGGGTATCGGCCAGTACCCATCTGCTCGACGAGCTACGCAAACGGGTACGCAGCGCCCGCGCTACTG
ACCCCGCCGCCGTGCGGGAATTGCTCGTCGCTGCATGCGAAGATTTGCTGCGCCCCCTGCAAAAACCGCTGGAGATTGGG
ATGGATACGCCGACGGTCATCATGATGGTCGGCGTCAACGGCGCGGGGAAGACTACCTCCATTGGCAAACTCACCCGGCG
CCTGGCCCAGGAGGGAGCCACTGTTCTGCTCGCGGCGGGGGACACCTTTCGTGCCGCTGCGCGGGAGCAGTTGGGGGTCT
GGGCGGATCGCAATACGGTGGACATCGTTGGCCAGATCGGCGGCGACCCTGCCGCTGTGGCTTTCGACGCAGTGCAGGCG
GGCGCGGCGCGTGGCTGCGATGTCGTCCTCGTCGATACGGCAGGGCGCTTGCCCACGCAATTGCATTTGATGGAAGAGCT
GAAGAAAGTGCGGCGGGTGGTGCAAAAGGCGATGCCTACTGCGCCGCACGAAGTGATCCTGGTGCTTGATGGCAATACGG
GGCAAAACGCACTCGCGCAGGTTCGCGCCTTTGACGATGCGCTGGGGCTGACGGGGCTGATCGTGACCAAACTTGACGGC
ACCGCCAAGGGAGGCGTGCTCGCAGCGATAGCTCGCGAGCGGCCCATTCCTGTCTACTTCATCGGCGTTGGGGAACAGCT
CGAAGATTTGGAAACCTTCGACGCTCGGGAATTTGCGCAGGCGTTGCTTGCCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(84-143)

SRP54-type protein, GTPase domain (SRP54)

(164-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

57.321

88.187

0.505

Multiple sequence alignment