Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   LO007_RS08385 Genome accession   NZ_CP087312
Coordinates   1767725..1768426 (+) Length   233 a.a.
NCBI ID   WP_032000520.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC059     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1762725..1773426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS08350 kdsB 1763248..1764009 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO007_RS08355 - 1764021..1765001 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  LO007_RS08360 - 1765013..1765354 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  LO007_RS08365 - 1765372..1766145 (+) 774 WP_000497298.1 TatD family hydrolase -
  LO007_RS08370 - 1766183..1766791 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LO007_RS08375 - 1766801..1767355 (+) 555 WP_000841373.1 type II secretion system protein -
  LO007_RS08380 xcpV 1767345..1767725 (+) 381 WP_000836907.1 type II secretion system minor pseudopilin GspI Machinery gene
  LO007_RS08385 xcpW 1767725..1768426 (+) 702 WP_032000520.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LO007_RS08390 gspK 1768426..1769385 (+) 960 WP_032000521.1 type II secretion system minor pseudopilin GspK -
  LO007_RS08395 - 1769615..1770211 (+) 597 WP_032000522.1 6-carboxytetrahydropterin synthase -
  LO007_RS08400 ung 1770262..1770975 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  LO007_RS08405 - 1770972..1772096 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LO007_RS08410 tadA 1772103..1772606 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  LO007_RS08415 - 1772676..1773119 (+) 444 WP_001246675.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26601.53 Da        Isoelectric Point: 9.5501

>NTDB_id=628599 LO007_RS08385 WP_032000520.1 1767725..1768426(+) (xcpW) [Acinetobacter baumannii strain OC059]
MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEATKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=628599 LO007_RS08385 WP_032000520.1 1767725..1768426(+) (xcpW) [Acinetobacter baumannii strain OC059]
ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGCCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991