Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   LO007_RS02530 Genome accession   NZ_CP087312
Coordinates   536532..537332 (+) Length   266 a.a.
NCBI ID   WP_187406181.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC059     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 531532..542332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS02505 - 532442..533740 (+) 1299 WP_111818380.1 glycosyltransferase family 1 protein -
  LO007_RS02510 - 533765..534316 (+) 552 WP_000669571.1 phosphatase PAP2 family protein -
  LO007_RS02515 iscX 534416..534616 (+) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  LO007_RS02520 ndk 534730..535161 (+) 432 WP_031999785.1 nucleoside-diphosphate kinase -
  LO007_RS02525 rlmN 535284..536516 (+) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  LO007_RS02530 pilF 536532..537332 (+) 801 WP_187406181.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  LO007_RS02535 - 537323..538114 (+) 792 WP_000405163.1 RodZ domain-containing protein -
  LO007_RS02540 ispG 538136..539251 (+) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  LO007_RS02545 hisS 539248..540540 (+) 1293 WP_000095254.1 histidine--tRNA ligase -
  LO007_RS02550 - 540569..541267 (+) 699 WP_000058788.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30018.39 Da        Isoelectric Point: 9.3928

>NTDB_id=628590 LO007_RS02530 WP_187406181.1 536532..537332(+) (pilF) [Acinetobacter baumannii strain OC059]
MSTPKLKTMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQLRIAGATLGYDQRYQALVNLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=628590 LO007_RS02530 WP_187406181.1 536532..537332(+) (pilF) [Acinetobacter baumannii strain OC059]
TTGAGTACTCCGAAGTTGAAGACCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCCAGTGGTTGCCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCAGAACATTACTTTAAGCGTGCAATTTCATCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAACTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGTAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

98.872

100

0.989
  pilF Acinetobacter baylyi ADP1

74.615

97.744

0.729