Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LO007_RS01385 Genome accession   NZ_CP087312
Coordinates   286999..287325 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain OC059     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 281999..292325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO007_RS01360 hemC 282616..283533 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  LO007_RS01365 - 283538..284305 (+) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  LO007_RS01370 - 284314..285153 (+) 840 WP_001230201.1 hypothetical protein -
  LO007_RS01375 - 285163..286356 (+) 1194 WP_031999578.1 hypothetical protein -
  LO007_RS01380 - 286364..286804 (+) 441 WP_000661569.1 thioesterase family protein -
  LO007_RS01385 hns 286999..287325 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  LO007_RS01390 gspN 287658..288401 (+) 744 WP_032000769.1 type II secretion system protein N -
  LO007_RS01395 - 288401..289237 (+) 837 WP_000870031.1 type II secretion system protein N -
  LO007_RS01400 gspD 289279..291549 (+) 2271 WP_032000768.1 type II secretion system secretin GspD -
  LO007_RS01405 - 291590..292219 (+) 630 WP_032000767.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=628582 LO007_RS01385 WP_000801427.1 286999..287325(+) (hns) [Acinetobacter baumannii strain OC059]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=628582 LO007_RS01385 WP_000801427.1 286999..287325(+) (hns) [Acinetobacter baumannii strain OC059]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1