Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LO005_RS17505 Genome accession   NZ_CP087309
Coordinates   3651955..3653109 (+) Length   384 a.a.
NCBI ID   WP_029424585.1    Uniprot ID   A0A2G8V6K8
Organism   Acinetobacter baumannii strain OC068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3646955..3658109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO005_RS17480 - 3647106..3648320 (+) 1215 WP_029424583.1 oxygenase MpaB family protein -
  LO005_RS17485 - 3648390..3648596 (-) 207 WP_000182542.1 hypothetical protein -
  LO005_RS17490 - 3648650..3650764 (-) 2115 WP_029424584.1 TonB-dependent copper receptor -
  LO005_RS17495 - 3650837..3651265 (-) 429 WP_000231981.1 DUF2946 family protein -
  LO005_RS17500 def 3651302..3651832 (-) 531 WP_001196539.1 peptide deformylase -
  LO005_RS17505 tsaP 3651955..3653109 (+) 1155 WP_029424585.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LO005_RS17510 dprA 3653130..3654260 (+) 1131 WP_002013158.1 DNA-processing protein DprA Machinery gene
  LO005_RS17515 - 3654311..3654880 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  LO005_RS17520 - 3655272..3656192 (-) 921 WP_086221561.1 DMT family transporter -
  LO005_RS17525 - 3656298..3656948 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42422.39 Da        Isoelectric Point: 8.5909

>NTDB_id=628570 LO005_RS17505 WP_029424585.1 3651955..3653109(+) (tsaP) [Acinetobacter baumannii strain OC068]
MKKVFDGMVNFHALGIKKHLLALALCTGVVIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRRLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAFVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=628570 LO005_RS17505 WP_029424585.1 3651955..3653109(+) (tsaP) [Acinetobacter baumannii strain OC068]
ATGAAAAAGGTTTTTGACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGTAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTGAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCGTTTAGTCGGTAAAGATGAGGGGGATGGCTGTGTCGGTATTATCCGTCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAAGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGCTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACCCAAGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTGATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTTTGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8V6K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.438

100

0.984