Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LO005_RS17055 Genome accession   NZ_CP087309
Coordinates   3559809..3560135 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain OC068     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3554809..3565135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO005_RS17035 - 3554917..3555546 (-) 630 WP_000219964.1 FHA domain-containing protein -
  LO005_RS17040 gspD 3555587..3557857 (-) 2271 WP_001196431.1 type II secretion system secretin GspD -
  LO005_RS17045 - 3557899..3558735 (-) 837 WP_000870031.1 type II secretion system protein N -
  LO005_RS17050 gspN 3558735..3559478 (-) 744 WP_000730343.1 type II secretion system protein N -
  LO005_RS17055 hns 3559809..3560135 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  LO005_RS17060 - 3560330..3560770 (-) 441 WP_000661569.1 thioesterase family protein -
  LO005_RS17065 - 3560778..3561971 (-) 1194 WP_029424457.1 membrane protein -
  LO005_RS17070 - 3561981..3562820 (-) 840 WP_029424458.1 hypothetical protein -
  LO005_RS17075 - 3562829..3563596 (-) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  LO005_RS17080 hemC 3563601..3564518 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=628565 LO005_RS17055 WP_000801427.1 3559809..3560135(-) (hns) [Acinetobacter baumannii strain OC068]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=628565 LO005_RS17055 WP_000801427.1 3559809..3560135(-) (hns) [Acinetobacter baumannii strain OC068]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1