Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   LO005_RS07955 Genome accession   NZ_CP087309
Coordinates   1672490..1673191 (+) Length   233 a.a.
NCBI ID   WP_000594589.1    Uniprot ID   A0A9P3CZ31
Organism   Acinetobacter baumannii strain OC068     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1667490..1678191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO005_RS07920 kdsB 1668013..1668774 (+) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO005_RS07925 - 1668786..1669766 (+) 981 WP_001075409.1 DNA polymerase III subunit delta' -
  LO005_RS07930 - 1669778..1670119 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  LO005_RS07935 - 1670137..1670910 (+) 774 WP_000497295.1 TatD family hydrolase -
  LO005_RS07940 - 1670948..1671556 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LO005_RS07945 - 1671566..1672120 (+) 555 WP_005128793.1 type II secretion system protein -
  LO005_RS07950 xcpV 1672110..1672490 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  LO005_RS07955 xcpW 1672490..1673191 (+) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LO005_RS07960 gspK 1673191..1674150 (+) 960 WP_029424377.1 type II secretion system minor pseudopilin GspK -
  LO005_RS07965 - 1674381..1674977 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  LO005_RS07970 ung 1675028..1675741 (+) 714 WP_029424376.1 uracil-DNA glycosylase -
  LO005_RS07975 - 1675738..1676862 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LO005_RS07980 tadA 1676869..1677373 (+) 505 Protein_1548 tRNA adenosine(34) deaminase TadA -
  LO005_RS07985 - 1677443..1677886 (+) 444 WP_001246675.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26639.58 Da        Isoelectric Point: 9.3468

>NTDB_id=628551 LO005_RS07955 WP_000594589.1 1672490..1673191(+) (xcpW) [Acinetobacter baumannii strain OC068]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=628551 LO005_RS07955 WP_000594589.1 1672490..1673191(+) (xcpW) [Acinetobacter baumannii strain OC068]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.571

100

0.996