Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LO005_RS07950 Genome accession   NZ_CP087309
Coordinates   1672110..1672490 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC068     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1667110..1677490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO005_RS07920 kdsB 1668013..1668774 (+) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO005_RS07925 - 1668786..1669766 (+) 981 WP_001075409.1 DNA polymerase III subunit delta' -
  LO005_RS07930 - 1669778..1670119 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  LO005_RS07935 - 1670137..1670910 (+) 774 WP_000497295.1 TatD family hydrolase -
  LO005_RS07940 - 1670948..1671556 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  LO005_RS07945 - 1671566..1672120 (+) 555 WP_005128793.1 type II secretion system protein -
  LO005_RS07950 xcpV 1672110..1672490 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  LO005_RS07955 xcpW 1672490..1673191 (+) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LO005_RS07960 gspK 1673191..1674150 (+) 960 WP_029424377.1 type II secretion system minor pseudopilin GspK -
  LO005_RS07965 - 1674381..1674977 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  LO005_RS07970 ung 1675028..1675741 (+) 714 WP_029424376.1 uracil-DNA glycosylase -
  LO005_RS07975 - 1675738..1676862 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  LO005_RS07980 tadA 1676869..1677373 (+) 505 Protein_1548 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=628550 LO005_RS07950 WP_000836911.1 1672110..1672490(+) (xcpV) [Acinetobacter baumannii strain OC068]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=628550 LO005_RS07950 WP_000836911.1 1672110..1672490(+) (xcpV) [Acinetobacter baumannii strain OC068]
ATGAAATCTAAAGGCTTTACCCTTTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1