Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LOZ96_RS18615 Genome accession   NZ_CP087304
Coordinates   3821868..3823022 (+) Length   384 a.a.
NCBI ID   WP_000755275.1    Uniprot ID   A0A828SKY6
Organism   Acinetobacter baumannii strain OC081     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3816868..3828022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ96_RS18590 - 3817019..3818233 (+) 1215 WP_001177946.1 oxygenase MpaB family protein -
  LOZ96_RS18595 - 3818303..3818509 (-) 207 WP_000182542.1 hypothetical protein -
  LOZ96_RS18600 - 3818563..3820677 (-) 2115 WP_001120679.1 TonB-dependent copper receptor -
  LOZ96_RS18605 - 3820750..3821178 (-) 429 WP_000231981.1 DUF2946 family protein -
  LOZ96_RS18610 def 3821215..3821745 (-) 531 WP_001196539.1 peptide deformylase -
  LOZ96_RS18615 tsaP 3821868..3823022 (+) 1155 WP_000755275.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LOZ96_RS18620 dprA 3823043..3824173 (+) 1131 WP_002018389.1 DNA-processing protein DprA Machinery gene
  LOZ96_RS18625 - 3824224..3824793 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  LOZ96_RS18630 - 3825185..3826105 (-) 921 WP_000084546.1 DMT family transporter -
  LOZ96_RS18635 - 3826211..3826861 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42357.31 Da        Isoelectric Point: 8.5935

>NTDB_id=628522 LOZ96_RS18615 WP_000755275.1 3821868..3823022(+) (tsaP) [Acinetobacter baumannii strain OC081]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTHLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAFVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=628522 LOZ96_RS18615 WP_000755275.1 3821868..3823022(+) (tsaP) [Acinetobacter baumannii strain OC081]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGCTACACTGGGCAAACCACTCACT
TACAACCTCAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTCTCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGCTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTGATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTTTGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A828SKY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.479

100

0.995