Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N4T41_RS04385 Genome accession   NZ_CP104340
Coordinates   568539..569174 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain 2021CK-01409     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563539..574174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T41_RS04360 (N4T41_04370) - 564379..565392 (+) 1014 WP_001097113.1 aminoglycoside phosphotransferase family protein -
  N4T41_RS04365 (N4T41_04375) murU 565392..566081 (+) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  N4T41_RS04370 (N4T41_04380) rsmG 566169..566801 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  N4T41_RS04375 (N4T41_04385) - 566823..567605 (+) 783 WP_000057217.1 ParA family protein -
  N4T41_RS04380 (N4T41_04390) - 567602..568489 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  N4T41_RS04385 (N4T41_04395) exbB 568539..569174 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N4T41_RS04390 (N4T41_04400) - 569190..569618 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  N4T41_RS04395 (N4T41_04405) msbA 569615..571342 (+) 1728 WP_001070723.1 lipid A export permease/ATP-binding protein MsbA -
  N4T41_RS04400 (N4T41_04410) lpxK 571345..572355 (+) 1011 WP_000050466.1 tetraacyldisaccharide 4'-kinase -
  N4T41_RS04405 (N4T41_04415) kdsB 572365..573126 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N4T41_RS04410 (N4T41_04420) - 573138..574118 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=628494 N4T41_RS04385 WP_000264037.1 568539..569174(+) (exbB) [Acinetobacter baumannii strain 2021CK-01409]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=628494 N4T41_RS04385 WP_000264037.1 568539..569174(+) (exbB) [Acinetobacter baumannii strain 2021CK-01409]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTGTTAATGAATGATGGTAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCCATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393