Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LO014_RS17625 Genome accession   NZ_CP087300
Coordinates   3514475..3515056 (-) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain OC061     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3509475..3520056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS17600 - 3509490..3510989 (+) 1500 WP_001257162.1 PLP-dependent aminotransferase family protein -
  LO014_RS17605 - 3511054..3512496 (-) 1443 WP_000718865.1 amino acid permease -
  LO014_RS17610 - 3512802..3513350 (-) 549 WP_002126369.1 helix-turn-helix domain-containing protein -
  LO014_RS17615 - 3513419..3514114 (+) 696 WP_004833589.1 AzlC family ABC transporter permease -
  LO014_RS17620 - 3514111..3514434 (+) 324 WP_031977117.1 AzlD domain-containing protein -
  LO014_RS17625 ssb 3514475..3515056 (-) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  LO014_RS17630 - 3515108..3516472 (-) 1365 WP_031949944.1 MFS transporter -
  LO014_RS17635 - 3516619..3517701 (-) 1083 WP_000680216.1 DUF475 domain-containing protein -
  LO014_RS17640 tenA 3517964..3518638 (+) 675 WP_000899423.1 thiaminase II -
  LO014_RS17645 - 3518688..3519029 (-) 342 WP_000263323.1 GlpM family protein -
  LO014_RS17650 - 3519082..3519435 (-) 354 WP_000580164.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=628478 LO014_RS17625 WP_001215080.1 3514475..3515056(-) (ssb) [Acinetobacter baumannii strain OC061]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=628478 LO014_RS17625 WP_001215080.1 3514475..3515056(-) (ssb) [Acinetobacter baumannii strain OC061]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAACGGTCAAGAACGTTACACTACAGAAATTCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394