Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LO014_RS01965 Genome accession   NZ_CP087300
Coordinates   403419..405647 (+) Length   742 a.a.
NCBI ID   WP_002058697.1    Uniprot ID   N9J4L1
Organism   Acinetobacter baumannii strain OC061     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 398419..410647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS01935 - 398503..398832 (-) 330 WP_000207459.1 chaperone modulator CbpM -
  LO014_RS01940 - 398844..399800 (-) 957 WP_002058658.1 DnaJ C-terminal domain-containing protein -
  LO014_RS01945 - 399925..400893 (-) 969 WP_014538385.1 IS30 family transposase -
  LO014_RS01950 - 401007..401252 (+) 246 Protein_369 IS30 family transposase -
  LO014_RS01955 gspG 401460..402041 (-) 582 WP_000865314.1 type II secretion system major pseudopilin GspG -
  LO014_RS01960 gspF 402065..403270 (-) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  LO014_RS01965 priA 403419..405647 (+) 2229 WP_002058697.1 primosomal protein N' Machinery gene
  LO014_RS01970 - 405724..407565 (+) 1842 WP_000008979.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LO014_RS01975 - 407731..408606 (+) 876 WP_001281765.1 Hsp33 family molecular chaperone HslO -
  LO014_RS01980 - 408744..409355 (+) 612 WP_001105722.1 LysE family translocator -
  LO014_RS01985 - 409502..410470 (+) 969 WP_014538385.1 IS30 family transposase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83944.82 Da        Isoelectric Point: 8.5653

>NTDB_id=628442 LO014_RS01965 WP_002058697.1 403419..405647(+) (priA) [Acinetobacter baumannii strain OC061]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGNFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYVVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHVPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=628442 LO014_RS01965 WP_002058697.1 403419..405647(+) (priA) [Acinetobacter baumannii strain OC061]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTAACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTCCCGATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGCCGAAGCTTTACTAAAACGTTCAATCAAACAGCAAGATGCTTATCAAATTTTAAAATTACATCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCACTGCAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGCCCAGCCCCTGTGCAATTAGCGCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAGGCCACCCAGCATGTCCTTAATGCACAGCATCAATATCAAGCCTTTTTATTAGATGGTTTAACGGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAAGTGCTAAAGCAAGGTAAGCAAGTATTAGTCTTAGTTCCTGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGATATCGCTTTATTACATTCGGGATTAAATGACTCTA
AACGCCTACAAGCATGGCAACAAGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTTATCATTTTAGATGAAGAACACGACCTGTCTTATAAACAACAAGAAGGTTTCCGTTACCATGC
GCGTGATGTCGCGCTTTATCGAGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCGGCAACCCCAAGCATTGATAGCT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCGCTTCAGCTGAACCAACGTGCAGGCCATGCGCTTTTACCCAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATTTTCTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCTCATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTATTCTTACTTACATTGCCACCACTGTGGCACAGTC
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAAAAGAGTCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTTCCAGACCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAACAAAATAAACCTTCGATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCAGGTTTACTCAGTGTCGATATTCGAGCGCCAGAGCGTACAGCTCA
ATTGATTGTACAAGTCGCTGGTCGTGCAGGTCGTGGAGAACATAAAGGTCATGTTTATTTACAAACCTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAGGATTATCGGGCAGTCGCGAAACAAACATTGGCTGAGCGTAAAGTTGCCTTA
CTGCCGCCTTATCGCTATGTCGTACTTATACGCGCTGAATCGAAAGATCGCGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATAGCAGGTGATATTGTTGATATCTGGGGACCAATTCCAGCCCCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTCCATGTGCCTAGACAGCATCAACTCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J4L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.844

100

0.978